Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Z9U entry

There are 4 chains in PDB entry 6Z9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 216LEU 309
B
 PRO 35LEU 161
C
 PRO 215LEU 309
D
 ASP 37ARG 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6Z9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
216 230Right-handed alpha
Helix 2
AA2
A
237 241Right-handed 310
Helix 3
AA3
B
37 42Right-handed 310
Helix 4
AA4
B
43 52Right-handed alpha
Helix 5
AA5
B
56 73Right-handed alpha
Helix 6
AA6
B
115 130Right-handed alpha
Helix 7
AA7
C
216 230Right-handed alpha
Helix 8
AA8
C
249 254Right-handed alpha
Helix 9
AA9
C
271 280Right-handed alpha
Helix 10
AB1
D
37 42Right-handed 310
Helix 11
AB2
D
43 52Right-handed alpha
Helix 12
AB3
D
56 72Right-handed alpha
Helix 13
AB4
D
116 131Right-handed alpha
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There are 4 sheets in PDB entry 6Z9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
244 247anti-parallel
Strand 3
C
258 262anti-parallel
Strand 4
C
287 293parallel
Strand 5
C
299 307anti-parallel
Strand 6
B
150 157anti-parallel
Strand 7
B
138 144anti-parallel
Strand 8
B
103 109parallel
Strand 9
B
89 95anti-parallel
Strand 10
B
78 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
D
167 169anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 235first strand
Strand 2
C
244 247anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
286 293parallel
Strand 5
A
299 306anti-parallel
Strand 6
D
150 157anti-parallel
Strand 7
D
138 144anti-parallel
Strand 8
D
103 109parallel
Strand 9
D
89 95anti-parallel
Strand 10
D
78 84anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
D
113 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il