Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z9Y entry

There are 2 chains in PDB entry 6Z9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 66	PHE 723
B	ALA 67	ARG 713

There are 25 helices in PDB entry 6Z9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	104	Right-handed alpha
Helix 2	AA2	A	126	128	Right-handed 310
Helix 3	AA3	A	155	159	Right-handed 310
Helix 4	AA4	A	394	398	Right-handed 310
Helix 5	AA5	A	446	449	Right-handed 310
Helix 6	AA6	A	495	500	Right-handed alpha
Helix 7	AA7	A	511	516	Right-handed alpha
Helix 8	AA8	A	602	604	Right-handed 310
Helix 9	AA9	B	99	103	Right-handed 310
Helix 10	AB1	B	149	154	Right-handed 310
Helix 11	AB2	B	155	159	Right-handed 310
Helix 12	AB3	B	394	398	Right-handed 310
Helix 13	AB4	B	495	500	Right-handed alpha
Helix 14	AB5	B	511	516	Right-handed alpha
Helix 15	AB6	C	97	104	Right-handed alpha
Helix 16	AB7	C	149	154	Right-handed 310
Helix 17	AB8	C	155	159	Right-handed 310
Helix 18	AB9	C	495	501	Right-handed alpha
Helix 19	AC1	C	602	604	Right-handed 310
Helix 20	AC2	D	126	128	Right-handed 310
Helix 21	AC3	D	149	154	Right-handed 310
Helix 22	AC4	D	155	159	Right-handed 310
Helix 23	AC5	D	394	398	Right-handed 310
Helix 24	AC6	D	495	501	Right-handed alpha
Helix 25	AC7	D	697	701	Right-handed 310

There are 22 sheets in PDB entry 6Z9Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	130	134	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	119	122	anti-parallel

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There are 23 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	216	first strand
Strand 2	A	198	205	anti-parallel
Strand 3	A	714	722	anti-parallel
Strand 4	A	674	681	anti-parallel
Strand 5	A	659	669	anti-parallel
Strand 6	A	626	635	anti-parallel
Strand 7	A	614	623	anti-parallel
Strand 8	A	587	600	anti-parallel
Strand 9	A	570	582	anti-parallel
Strand 10	A	535	547	anti-parallel
Strand 11	A	519	531	anti-parallel
Strand 12	A	481	492	anti-parallel
Strand 13	A	467	475	anti-parallel
Strand 14	A	423	438	anti-parallel
Strand 15	A	401	417	anti-parallel
Strand 16	A	365	382	anti-parallel
Strand 17	A	345	360	anti-parallel
Strand 18	A	309	323	anti-parallel
Strand 19	A	292	303	anti-parallel
Strand 20	A	266	278	anti-parallel
Strand 21	A	249	260	anti-parallel
Strand 22	A	227	234	anti-parallel
Strand 23	A	210	214	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	223	226	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	437	first strand
Strand 2	A	460	464	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	451	453	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	555	first strand
Strand 2	A	562	568	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	180	185	anti-parallel
Strand 4	B	130	134	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	119	122	anti-parallel

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There are 23 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	219	first strand
Strand 2	B	195	205	anti-parallel
Strand 3	B	714	721	anti-parallel
Strand 4	B	674	681	anti-parallel
Strand 5	B	659	671	anti-parallel
Strand 6	B	626	635	anti-parallel
Strand 7	B	614	623	anti-parallel
Strand 8	B	587	600	anti-parallel
Strand 9	B	570	582	anti-parallel
Strand 10	B	535	547	anti-parallel
Strand 11	B	519	531	anti-parallel
Strand 12	B	481	492	anti-parallel
Strand 13	B	467	475	anti-parallel
Strand 14	B	423	438	anti-parallel
Strand 15	B	402	417	anti-parallel
Strand 16	B	365	382	anti-parallel
Strand 17	B	344	362	anti-parallel
Strand 18	B	309	326	anti-parallel
Strand 19	B	287	303	anti-parallel
Strand 20	B	266	279	anti-parallel
Strand 21	B	249	260	anti-parallel
Strand 22	B	223	234	anti-parallel
Strand 23	B	210	220	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	437	first strand
Strand 2	B	460	464	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	555	first strand
Strand 2	B	562	568	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	180	185	anti-parallel
Strand 4	C	130	134	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	111	first strand
Strand 2	C	119	122	anti-parallel

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There are 23 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	219	first strand
Strand 2	C	195	205	anti-parallel
Strand 3	C	714	722	anti-parallel
Strand 4	C	674	681	anti-parallel
Strand 5	C	659	668	anti-parallel
Strand 6	C	626	635	anti-parallel
Strand 7	C	614	623	anti-parallel
Strand 8	C	587	600	anti-parallel
Strand 9	C	570	581	anti-parallel
Strand 10	C	536	547	anti-parallel
Strand 11	C	519	531	anti-parallel
Strand 12	C	481	492	anti-parallel
Strand 13	C	460	475	anti-parallel
Strand 14	C	423	438	anti-parallel
Strand 15	C	404	417	anti-parallel
Strand 16	C	365	379	anti-parallel
Strand 17	C	348	362	anti-parallel
Strand 18	C	309	322	anti-parallel
Strand 19	C	292	303	anti-parallel
Strand 20	C	266	279	anti-parallel
Strand 21	C	249	260	anti-parallel
Strand 22	C	223	234	anti-parallel
Strand 23	C	210	220	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	554	first strand
Strand 2	C	563	568	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	180	185	anti-parallel
Strand 4	D	130	134	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	111	first strand
Strand 2	D	119	122	anti-parallel

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There are 23 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	219	first strand
Strand 2	D	195	205	anti-parallel
Strand 3	D	714	722	anti-parallel
Strand 4	D	674	681	anti-parallel
Strand 5	D	659	669	anti-parallel
Strand 6	D	626	635	anti-parallel
Strand 7	D	614	622	anti-parallel
Strand 8	D	587	600	anti-parallel
Strand 9	D	570	582	anti-parallel
Strand 10	D	535	547	anti-parallel
Strand 11	D	519	531	anti-parallel
Strand 12	D	481	492	anti-parallel
Strand 13	D	468	475	anti-parallel
Strand 14	D	423	438	anti-parallel
Strand 15	D	401	419	anti-parallel
Strand 16	D	365	382	anti-parallel
Strand 17	D	344	360	anti-parallel
Strand 18	D	309	326	anti-parallel
Strand 19	D	292	303	anti-parallel
Strand 20	D	266	279	anti-parallel
Strand 21	D	249	260	anti-parallel
Strand 22	D	224	234	anti-parallel
Strand 23	D	210	218	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	386	first strand
Strand 2	D	391	393	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	437	first strand
Strand 2	D	460	467	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	549	555	first strand
Strand 2	D	562	568	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9Y