Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZA5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZA5 entry

There are 4 chains in PDB entry 6ZA5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	ARG 449
B	ALA 10	ARG 449
C	SER 15	ARG 449
D	SER 15	PRO 21

There are 56 helices in PDB entry 6ZA5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	40	Right-handed alpha
Helix 2	AA2	A	87	100	Right-handed alpha
Helix 3	AA3	A	112	120	Right-handed 310
Helix 4	AA4	A	121	125	Right-handed 310
Helix 5	AA5	A	154	168	Right-handed alpha
Helix 6	AA6	A	186	200	Right-handed alpha
Helix 7	AA7	A	219	229	Right-handed alpha
Helix 8	AA8	A	277	291	Right-handed alpha
Helix 9	AA9	A	291	313	Right-handed alpha
Helix 10	AB1	A	348	357	Right-handed alpha
Helix 11	AB2	A	359	362	Right-handed 310
Helix 12	AB3	A	366	378	Right-handed alpha
Helix 13	AB4	A	427	440	Right-handed alpha
Helix 14	AB5	A	441	446	Right-handed 310
Helix 15	AB6	B	25	40	Right-handed alpha
Helix 16	AB7	B	87	100	Right-handed alpha
Helix 17	AB8	B	112	120	Right-handed 310
Helix 18	AB9	B	121	125	Right-handed 310
Helix 19	AC1	B	154	168	Right-handed alpha
Helix 20	AC2	B	186	200	Right-handed alpha
Helix 21	AC3	B	219	229	Right-handed alpha
Helix 22	AC4	B	277	291	Right-handed alpha
Helix 23	AC5	B	291	311	Right-handed alpha
Helix 24	AC6	B	348	356	Right-handed alpha
Helix 25	AC7	B	359	362	Right-handed 310
Helix 26	AC8	B	366	378	Right-handed alpha
Helix 27	AC9	B	427	440	Right-handed alpha
Helix 28	AD1	B	441	446	Right-handed 310
Helix 29	AD2	C	25	38	Right-handed alpha
Helix 30	AD3	C	87	100	Right-handed alpha
Helix 31	AD4	C	112	120	Right-handed 310
Helix 32	AD5	C	121	125	Right-handed 310
Helix 33	AD6	C	154	168	Right-handed alpha
Helix 34	AD7	C	186	200	Right-handed alpha
Helix 35	AD8	C	219	229	Right-handed alpha
Helix 36	AD9	C	277	291	Right-handed alpha
Helix 37	AE1	C	291	313	Right-handed alpha
Helix 38	AE2	C	348	356	Right-handed alpha
Helix 39	AE3	C	359	362	Right-handed 310
Helix 40	AE4	C	366	378	Right-handed alpha
Helix 41	AE5	C	427	440	Right-handed alpha
Helix 42	AE6	C	441	446	Right-handed 310
Helix 43	AE7	D	25	40	Right-handed alpha
Helix 44	AE8	D	87	100	Right-handed alpha
Helix 45	AE9	D	112	120	Right-handed 310
Helix 46	AF1	D	121	125	Right-handed 310
Helix 47	AF2	D	154	168	Right-handed alpha
Helix 48	AF3	D	186	200	Right-handed alpha
Helix 49	AF4	D	219	229	Right-handed alpha
Helix 50	AF5	D	277	291	Right-handed alpha
Helix 51	AF6	D	291	311	Right-handed alpha
Helix 52	AF7	D	348	356	Right-handed alpha
Helix 53	AF8	D	359	362	Right-handed 310
Helix 54	AF9	D	366	378	Right-handed alpha
Helix 55	AG1	D	427	440	Right-handed alpha
Helix 56	AG2	D	441	446	Right-handed 310

There are 16 sheets in PDB entry 6ZA5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	213	first strand
Strand 2	A	413	422	anti-parallel
Strand 3	A	406	410	anti-parallel
Strand 4	A	244	250	anti-parallel
Strand 5	A	235	241	anti-parallel
Strand 6	A	45	50	anti-parallel
Strand 7	A	53	58	anti-parallel
Strand 8	A	139	143	anti-parallel
Strand 9	A	148	151	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	71	75	anti-parallel
Strand 3	A	60	66	anti-parallel
Strand 4	A	132	137	anti-parallel
Strand 5	A	105	110	anti-parallel
Strand 6	A	388	393	anti-parallel
Strand 7	A	398	402	anti-parallel
Strand 8	A	253	257	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	265	first strand
Strand 2	A	338	342	anti-parallel
Strand 3	A	319	322	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	332	336	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	213	first strand
Strand 2	B	413	422	anti-parallel
Strand 3	B	406	410	anti-parallel
Strand 4	B	244	250	anti-parallel
Strand 5	B	235	241	anti-parallel
Strand 6	B	45	50	anti-parallel
Strand 7	B	53	58	anti-parallel
Strand 8	B	139	143	anti-parallel
Strand 9	B	148	151	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	60	66	anti-parallel
Strand 4	B	132	137	anti-parallel
Strand 5	B	105	110	anti-parallel
Strand 6	B	388	393	anti-parallel
Strand 7	B	398	402	anti-parallel
Strand 8	B	253	257	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	265	first strand
Strand 2	B	338	342	anti-parallel
Strand 3	B	319	322	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	332	336	anti-parallel
Strand 3	B	325	329	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	139	143	anti-parallel
Strand 4	C	53	58	anti-parallel
Strand 5	C	45	50	anti-parallel
Strand 6	C	235	241	anti-parallel
Strand 7	C	244	250	anti-parallel
Strand 8	C	406	410	anti-parallel
Strand 9	C	413	422	anti-parallel
Strand 10	C	206	213	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	71	75	anti-parallel
Strand 3	C	60	66	anti-parallel
Strand 4	C	132	137	anti-parallel
Strand 5	C	105	110	anti-parallel
Strand 6	C	388	393	anti-parallel
Strand 7	C	398	402	anti-parallel
Strand 8	C	253	257	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	265	first strand
Strand 2	C	338	342	anti-parallel
Strand 3	C	319	321	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	325	329	anti-parallel

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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	147	151	anti-parallel
Strand 3	D	139	143	anti-parallel
Strand 4	D	53	58	anti-parallel
Strand 5	D	45	50	anti-parallel
Strand 6	D	235	241	anti-parallel
Strand 7	D	244	250	anti-parallel
Strand 8	D	406	410	anti-parallel
Strand 9	D	413	422	anti-parallel
Strand 10	D	206	213	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	82	first strand
Strand 2	D	71	75	anti-parallel
Strand 3	D	60	66	anti-parallel
Strand 4	D	132	137	anti-parallel
Strand 5	D	105	110	anti-parallel
Strand 6	D	388	393	anti-parallel
Strand 7	D	398	402	anti-parallel
Strand 8	D	253	257	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	265	first strand
Strand 2	D	338	342	anti-parallel
Strand 3	D	319	322	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	332	336	anti-parallel
Strand 3	D	325	329	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZA5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZA5