Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZBQ entry

There are 2 chains in PDB entry 6ZBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 242SER 336
B
 LEU 245SER 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6ZBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
285 291Right-handed alpha
Helix 2
AA2
A
311 325Right-handed alpha
Helix 3
AA3
B
285 291Right-handed alpha
Helix 4
AA4
B
311 324Right-handed alpha
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There are 4 sheets in PDB entry 6ZBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
329 334anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
276 281anti-parallel
Strand 5
A
262 266anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
329 334anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
305 306anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 252first strand
Strand 2
B
329 334anti-parallel
Strand 3
B
298 302anti-parallel
Strand 4
B
276 281anti-parallel
Strand 5
B
262 265anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 252first strand
Strand 2
B
329 334anti-parallel
Strand 3
B
298 302anti-parallel
Strand 4
B
305 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il