Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZD0 entry

There are 6 chains in PDB entry 6ZD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 56	LYS 528
B	LEU 1	ASN 77
C	ASN 56	LYS 528
D	LEU 1	ASN 77
E	ASN 56	LYS 528
F	LEU 1	ASN 77

There are 53 helices in PDB entry 6ZD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	69	Right-handed alpha
Helix 2	AA2	A	74	79	Right-handed alpha
Helix 3	AA3	A	121	125	Right-handed 310
Helix 4	AA4	A	137	142	Right-handed alpha
Helix 5	AA5	A	177	196	Right-handed alpha
Helix 6	AA6	A	197	200	Right-handed 310
Helix 7	AA7	A	215	224	Right-handed alpha
Helix 8	AA8	A	226	231	Right-handed alpha
Helix 9	AA9	A	232	235	Right-handed 310
Helix 10	AB1	A	237	243	Right-handed alpha
Helix 11	AB2	A	267	271	Right-handed 310
Helix 12	AB3	A	277	284	Right-handed alpha
Helix 13	AB4	A	315	326	Right-handed alpha
Helix 14	AB5	A	336	342	Right-handed alpha
Helix 15	AB6	A	358	363	Right-handed alpha
Helix 16	AB7	A	364	372	Right-handed alpha
Helix 17	AB8	B	20	24	Right-handed 310
Helix 18	AB9	B	46	54	Right-handed alpha
Helix 19	AC1	C	57	71	Right-handed alpha
Helix 20	AC2	C	74	79	Right-handed alpha
Helix 21	AC3	C	121	128	Right-handed 310
Helix 22	AC4	C	137	142	Right-handed alpha
Helix 23	AC5	C	177	196	Right-handed alpha
Helix 24	AC6	C	197	200	Right-handed 310
Helix 25	AC7	C	215	224	Right-handed alpha
Helix 26	AC8	C	226	231	Right-handed alpha
Helix 27	AC9	C	232	235	Right-handed 310
Helix 28	AD1	C	237	243	Right-handed alpha
Helix 29	AD2	C	267	272	Right-handed 310
Helix 30	AD3	C	277	284	Right-handed alpha
Helix 31	AD4	C	315	326	Right-handed alpha
Helix 32	AD5	C	336	342	Right-handed alpha
Helix 33	AD6	C	357	363	Right-handed alpha
Helix 34	AD7	C	366	374	Right-handed alpha
Helix 35	AD8	D	46	54	Right-handed alpha
Helix 36	AD9	D	71	75	Right-handed 310
Helix 37	AE1	E	57	71	Right-handed alpha
Helix 38	AE2	E	74	79	Right-handed alpha
Helix 39	AE3	E	121	128	Right-handed 310
Helix 40	AE4	E	137	142	Right-handed alpha
Helix 41	AE5	E	177	196	Right-handed alpha
Helix 42	AE6	E	197	200	Right-handed 310
Helix 43	AE7	E	216	222	Right-handed alpha
Helix 44	AE8	E	226	231	Right-handed alpha
Helix 45	AE9	E	237	243	Right-handed alpha
Helix 46	AF1	E	277	284	Right-handed alpha
Helix 47	AF2	E	316	324	Right-handed alpha
Helix 48	AF3	E	336	342	Right-handed alpha
Helix 49	AF4	E	357	363	Right-handed alpha
Helix 50	AF5	E	366	374	Right-handed alpha
Helix 51	AF6	F	41	45	Right-handed 310
Helix 52	AF7	F	46	55	Right-handed alpha
Helix 53	AF8	F	71	75	Right-handed 310

There are 31 sheets in PDB entry 6ZD0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	97	first strand
Strand 2	A	100	106	anti-parallel
Strand 3	A	414	417	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	115	first strand
Strand 2	A	402	411	anti-parallel
Strand 3	A	81	84	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	292	294	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	247	262	anti-parallel
Strand 4	A	297	310	anti-parallel
Strand 5	A	385	390	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	212	first strand
Strand 2	A	249	253	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	420	425	anti-parallel
Strand 3	A	508	515	parallel
Strand 4	A	520	526	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	436	first strand
Strand 2	A	480	486	anti-parallel
Strand 3	A	494	496	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	442	first strand
Strand 2	A	448	453	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	483	first strand
Strand 2	A	498	503	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	16	18	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	40	first strand
Strand 2	B	25	31	anti-parallel
Strand 3	B	60	64	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	403	405	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	97	first strand
Strand 2	C	100	107	anti-parallel
Strand 3	C	415	417	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	111	first strand
Strand 2	C	406	409	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	292	298	anti-parallel
Strand 3	C	389	393	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	173	first strand
Strand 2	C	155	159	anti-parallel
Strand 3	C	247	262	anti-parallel
Strand 4	C	297	310	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	212	first strand
Strand 2	C	249	253	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	468	470	first strand
Strand 2	C	420	425	anti-parallel
Strand 3	C	508	516	parallel
Strand 4	C	519	525	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	436	first strand
Strand 2	C	480	486	anti-parallel
Strand 3	C	494	500	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	443	first strand
Strand 2	C	447	453	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	16	18	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	40	first strand
Strand 2	D	25	31	anti-parallel
Strand 3	D	60	64	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	82	first strand
Strand 2	E	403	413	parallel
Strand 3	E	100	113	anti-parallel
Strand 4	E	91	97	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	173	first strand
Strand 2	E	155	160	anti-parallel
Strand 3	E	247	262	anti-parallel
Strand 4	E	299	310	anti-parallel
Strand 5	E	346	348	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	212	first strand
Strand 2	E	249	252	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	466	472	first strand
Strand 2	E	419	425	anti-parallel
Strand 3	E	509	516	parallel
Strand 4	E	519	526	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	449	454	first strand
Strand 2	E	432	441	anti-parallel
Strand 3	E	480	486	anti-parallel
Strand 4	E	494	496	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	299	first strand
Strand 2	E	388	393	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	479	483	first strand
Strand 2	E	498	503	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	F	16	18	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	40	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	60	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZD0