Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZD2 entry

There is 1 chain in PDB entry 6ZD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 158ASP 744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 6ZD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
163 166Right-handed 310
Helix 2
AA2
A
183 193Right-handed alpha
Helix 3
AA3
A
198 202Right-handed 310
Helix 4
AA4
A
203 208Right-handed alpha
Helix 5
AA5
A
209 227Right-handed alpha
Helix 6
AA6
A
228 237Right-handed alpha
Helix 7
AA7
A
247 252Right-handed 310
Helix 8
AA8
A
254 270Right-handed alpha
Helix 9
AA9
A
277 293Right-handed alpha
Helix 10
AB1
A
301 307Right-handed alpha
Helix 11
AB2
A
308 309Right-handed 310
Helix 12
AB3
A
310 314Right-handed 310
Helix 13
AB4
A
327 347Right-handed alpha
Helix 14
AB5
A
347 355Right-handed alpha
Helix 15
AB6
A
374 392Right-handed alpha
Helix 16
AB7
A
429 435Right-handed alpha
Helix 17
AB8
A
438 456Right-handed alpha
Helix 18
AB9
A
456 471Right-handed alpha
Helix 19
AC1
A
475 480Right-handed alpha
Helix 20
AC2
A
484 503Right-handed alpha
Helix 21
AC3
A
518 523Right-handed alpha
Helix 22
AC4
A
524 535Right-handed alpha
Helix 23
AC5
A
604 617Right-handed alpha
Helix 24
AC6
A
644 661Right-handed alpha
Helix 25
AC7
A
662 666Right-handed 310
Helix 26
AC8
A
667 669Right-handed 310
Helix 27
AC9
A
686 699Right-handed alpha
Helix 28
AD1
A
700 706Right-handed 310
Helix 29
AD2
A
710 714Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6ZD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
299 300anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 360first strand
Strand 2
A
369 373anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
630 634anti-parallel
Strand 3
A
619 622anti-parallel
Strand 4
A
407 415parallel
Strand 5
A
418 425anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 676first strand
Strand 2
A
679 684anti-parallel
Strand 3
A
510 515anti-parallel
Strand 4
A
715 718anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 547first strand
Strand 2
A
600 603anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 728first strand
Strand 2
A
732 735anti-parallel
Strand 3
A
741 743anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il