Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZDF entry

There are 3 chains in PDB entry 6ZDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 99ALA 454
B
 PRO 98ALA 454
C
 MET 97ALA 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 6ZDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
132 137Right-handed alpha
Helix 2
AA2
A
165 178Right-handed alpha
Helix 3
AA3
A
203 215Right-handed alpha
Helix 4
AA4
A
230 246Right-handed alpha
Helix 5
AA5
A
269 273Right-handed 310
Helix 6
AA6
A
274 283Right-handed alpha
Helix 7
AA7
A
307 316Right-handed alpha
Helix 8
AA8
A
334 336Right-handed 310
Helix 9
AA9
A
337 348Right-handed alpha
Helix 10
AB1
A
368 373Right-handed 310
Helix 11
AB2
A
379 391Right-handed alpha
Helix 12
AB3
A
433 451Right-handed alpha
Helix 13
AB4
B
132 137Right-handed alpha
Helix 14
AB5
B
165 178Right-handed alpha
Helix 15
AB6
B
203 215Right-handed alpha
Helix 16
AB7
B
230 246Right-handed alpha
Helix 17
AB8
B
269 273Right-handed 310
Helix 18
AB9
B
274 283Right-handed alpha
Helix 19
AC1
B
307 316Right-handed alpha
Helix 20
AC2
B
334 336Right-handed 310
Helix 21
AC3
B
337 348Right-handed alpha
Helix 22
AC4
B
368 373Right-handed 310
Helix 23
AC5
B
376 378Right-handed 310
Helix 24
AC6
B
379 391Right-handed alpha
Helix 25
AC7
B
433 451Right-handed alpha
Helix 26
AC8
C
132 137Right-handed alpha
Helix 27
AC9
C
165 178Right-handed alpha
Helix 28
AD1
C
203 215Right-handed alpha
Helix 29
AD2
C
230 246Right-handed alpha
Helix 30
AD3
C
269 273Right-handed 310
Helix 31
AD4
C
274 283Right-handed alpha
Helix 32
AD5
C
307 316Right-handed alpha
Helix 33
AD6
C
334 336Right-handed 310
Helix 34
AD7
C
337 348Right-handed alpha
Helix 35
AD8
C
368 373Right-handed 310
Helix 36
AD9
C
376 378Right-handed 310
Helix 37
AE1
C
379 391Right-handed alpha
Helix 38
AE2
C
433 451Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6ZDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
298 302parallel
Strand 4
A
319 321parallel
Strand 5
A
351 353parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
218 223parallel
Strand 4
A
181 188parallel
Strand 5
A
100 107parallel
Strand 6
A
397 399parallel
Strand 7
A
355 356parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
261 267anti-parallel
Strand 3
B
298 302parallel
Strand 4
B
319 321parallel
Strand 5
B
351 353parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
261 267anti-parallel
Strand 3
B
218 223parallel
Strand 4
B
183 188parallel
Strand 5
B
103 107parallel
Strand 6
B
397 399parallel
Strand 7
B
355 356parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
253 255first strand
Strand 2
C
261 267anti-parallel
Strand 3
C
298 302parallel
Strand 4
C
319 321parallel
Strand 5
C
351 353parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
253 255first strand
Strand 2
C
261 267anti-parallel
Strand 3
C
218 223parallel
Strand 4
C
183 188parallel
Strand 5
C
103 107parallel
Strand 6
C
397 399parallel
Strand 7
C
355 356parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il