Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZDP entry

There are 2 chains in PDB entry 6ZDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 158ILE 879
B
 G 1282 C 1357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6ZDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
183 193Right-handed alpha
Helix 2
AA2
A
198 202Right-handed 310
Helix 3
AA3
A
203 208Right-handed alpha
Helix 4
AA4
A
209 227Right-handed alpha
Helix 5
AA5
A
228 237Right-handed alpha
Helix 6
AA6
A
247 251Right-handed 310
Helix 7
AA7
A
254 270Right-handed alpha
Helix 8
AA8
A
271 276Right-handed alpha
Helix 9
AA9
A
277 294Right-handed alpha
Helix 10
AB1
A
301 307Right-handed alpha
Helix 11
AB2
A
310 314Right-handed 310
Helix 12
AB3
A
325 347Right-handed alpha
Helix 13
AB4
A
347 355Right-handed alpha
Helix 14
AB5
A
374 392Right-handed alpha
Helix 15
AB6
A
440 456Right-handed alpha
Helix 16
AB7
A
456 475Right-handed alpha
Helix 17
AB8
A
475 480Right-handed alpha
Helix 18
AB9
A
484 500Right-handed alpha
Helix 19
AC1
A
524 537Right-handed alpha
Helix 20
AC2
A
604 617Right-handed alpha
Helix 21
AC3
A
644 661Right-handed alpha
Helix 22
AC4
A
662 666Right-handed 310
Helix 23
AC5
A
686 698Right-handed alpha
Helix 24
AC6
A
701 705Right-handed 310
Helix 25
AC7
A
711 714Right-handed 310
Helix 26
AC8
A
759 771Right-handed alpha
Helix 27
AC9
A
784 808Right-handed alpha
Helix 28
AD1
A
819 841Right-handed alpha
Helix 29
AD2
A
845 857Right-handed alpha
Helix 30
AD3
A
867 876Right-handed alpha
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There are 7 sheets in PDB entry 6ZDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
299 300anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
370 373anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
629 634anti-parallel
Strand 3
A
619 623anti-parallel
Strand 4
A
407 414parallel
Strand 5
A
419 425anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 674first strand
Strand 2
A
679 684anti-parallel
Strand 3
A
510 517anti-parallel
Strand 4
A
708 709anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 674first strand
Strand 2
A
679 684anti-parallel
Strand 3
A
510 517anti-parallel
Strand 4
A
715 718anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 547first strand
Strand 2
A
600 603anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 729first strand
Strand 2
A
732 735anti-parallel
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