Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZDQ entry

There are 2 chains in PDB entry 6ZDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 175ASP 869
C
 G 1259 C 1326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6ZDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
182 194Right-handed alpha
Helix 2
AA2
A
205 222Right-handed alpha
Helix 3
AA3
A
223 232Right-handed alpha
Helix 4
AA4
A
248 264Right-handed alpha
Helix 5
AA5
A
265 270Right-handed alpha
Helix 6
AA6
A
270 288Right-handed alpha
Helix 7
AA7
A
295 300Right-handed alpha
Helix 8
AA8
A
308 312Right-handed 310
Helix 9
AA9
A
319 340Right-handed alpha
Helix 10
AB1
A
340 349Right-handed alpha
Helix 11
AB2
A
368 386Right-handed alpha
Helix 12
AB3
A
391 395Right-handed 310
Helix 13
AB4
A
434 450Right-handed alpha
Helix 14
AB5
A
450 469Right-handed alpha
Helix 15
AB6
A
471 475Right-handed 310
Helix 16
AB7
A
478 498Right-handed alpha
Helix 17
AB8
A
512 517Right-handed alpha
Helix 18
AB9
A
518 529Right-handed alpha
Helix 19
AC1
A
592 605Right-handed alpha
Helix 20
AC2
A
631 650Right-handed alpha
Helix 21
AC3
A
675 687Right-handed alpha
Helix 22
AC4
A
689 694Right-handed 310
Helix 23
AC5
A
745 761Right-handed alpha
Helix 24
AC6
A
762 766Right-handed 310
Helix 25
AC7
A
773 799Right-handed alpha
Helix 26
AC8
A
805 829Right-handed alpha
Helix 27
AC9
A
833 849Right-handed alpha
Helix 28
AD1
A
855 863Right-handed alpha
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There are 5 sheets in PDB entry 6ZDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
363 367anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
618 623anti-parallel
Strand 3
A
608 612anti-parallel
Strand 4
A
401 408parallel
Strand 5
A
413 419anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 664first strand
Strand 2
A
668 673anti-parallel
Strand 3
A
504 509anti-parallel
Strand 4
A
704 706anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 541first strand
Strand 2
A
589 591anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 716first strand
Strand 2
A
720 723anti-parallel
Strand 3
A
729 731anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il