Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZDT entry

There are 3 chains in PDB entry 6ZDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 86HIS 313
A
 ILE 315LYS 326
B
 GLY -1PHE 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6ZDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 158Right-handed alpha
Helix 2
AA2
A
178 189Right-handed alpha
Helix 3
AA3
A
200 212Right-handed alpha
Helix 4
AA4
A
226 234Right-handed 310
Helix 5
AA5
A
248 260Right-handed alpha
Helix 6
AA6
A
274 276Right-handed 310
Helix 7
AA7
A
282 296Right-handed alpha
Helix 8
AA8
B
26 29Right-handed 310
Helix 9
AA9
B
30 39Right-handed alpha
Helix 10
AB1
B
40 45Right-handed alpha
Helix 11
AB2
B
58 71Right-handed alpha
Helix 12
AB3
B
75 86Right-handed alpha
Helix 13
AB4
B
102 104Right-handed 310
Helix 14
AB5
B
105 113Right-handed alpha
Helix 15
AB6
B
121 135Right-handed alpha
Helix 16
AB7
B
136 139Right-handed 310
Helix 17
AB8
B
145 164Right-handed alpha
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There are 3 sheets in PDB entry 6ZDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
96 100anti-parallel
Strand 3
A
104 109anti-parallel
Strand 4
A
138 143anti-parallel
Strand 5
A
122 126anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
193 198parallel
Strand 3
A
169 173parallel
Strand 4
A
237 242parallel
Strand 5
A
261 272parallel
Strand 6
A
313 320anti-parallel
Strand 7
A
298 305anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 55first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
6 11anti-parallel
Strand 4
B
96 99parallel
Strand 5
B
116 119parallel
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