Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZDU entry

There are 2 chains in PDB entry 6ZDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 155ILE 867
B
 VAL 155ILE 690
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6ZDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
182 195Right-handed alpha
Helix 2
AA2
A
205 221Right-handed alpha
Helix 3
AA3
A
223 232Right-handed alpha
Helix 4
AA4
A
241 246Right-handed 310
Helix 5
AA5
A
248 264Right-handed alpha
Helix 6
AA6
A
265 270Right-handed alpha
Helix 7
AA7
A
270 287Right-handed alpha
Helix 8
AA8
A
295 301Right-handed alpha
Helix 9
AA9
A
319 340Right-handed alpha
Helix 10
AB1
A
340 348Right-handed alpha
Helix 11
AB2
A
368 386Right-handed alpha
Helix 12
AB3
A
391 397Right-handed 310
Helix 13
AB4
A
434 450Right-handed alpha
Helix 14
AB5
A
450 469Right-handed alpha
Helix 15
AB6
A
469 474Right-handed alpha
Helix 16
AB7
A
478 498Right-handed alpha
Helix 17
AB8
A
518 530Right-handed alpha
Helix 18
AB9
A
592 605Right-handed alpha
Helix 19
AC1
A
631 650Right-handed alpha
Helix 20
AC2
A
675 688Right-handed alpha
Helix 21
AC3
A
690 694Right-handed 310
Helix 22
AC4
A
699 703Right-handed 310
Helix 23
AC5
A
745 761Right-handed alpha
Helix 24
AC6
A
762 767Right-handed alpha
Helix 25
AC7
A
773 799Right-handed alpha
Helix 26
AC8
A
805 827Right-handed alpha
Helix 27
AC9
A
833 849Right-handed alpha
Helix 28
AD1
A
852 854Right-handed 310
Helix 29
AD2
A
855 863Right-handed alpha
Helix 30
AD3
B
182 195Right-handed alpha
Helix 31
AD4
B
205 221Right-handed alpha
Helix 32
AD5
B
223 232Right-handed alpha
Helix 33
AD6
B
241 246Right-handed 310
Helix 34
AD7
B
248 264Right-handed alpha
Helix 35
AD8
B
265 270Right-handed alpha
Helix 36
AD9
B
270 287Right-handed alpha
Helix 37
AE1
B
295 301Right-handed alpha
Helix 38
AE2
B
319 340Right-handed alpha
Helix 39
AE3
B
340 348Right-handed alpha
Helix 40
AE4
B
368 386Right-handed alpha
Helix 41
AE5
B
391 397Right-handed 310
Helix 42
AE6
B
434 450Right-handed alpha
Helix 43
AE7
B
450 469Right-handed alpha
Helix 44
AE8
B
469 474Right-handed alpha
Helix 45
AE9
B
478 498Right-handed alpha
Helix 46
AF1
B
518 530Right-handed alpha
Helix 47
AF2
B
592 605Right-handed alpha
Helix 48
AF3
B
631 650Right-handed alpha
Helix 49
AF4
B
675 688Right-handed alpha
Helix 50
AF5
B
690 694Right-handed 310
Helix 51
AF6
B
699 703Right-handed 310
Helix 52
AF7
B
745 761Right-handed alpha
Helix 53
AF8
B
762 767Right-handed alpha
Helix 54
AF9
B
773 799Right-handed alpha
Helix 55
AG1
B
805 827Right-handed alpha
Helix 56
AG2
B
833 849Right-handed alpha
Helix 57
AG3
B
852 854Right-handed 310
Helix 58
AG4
B
855 863Right-handed alpha
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There are 10 sheets in PDB entry 6ZDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
363 367anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 390first strand
Strand 2
A
620 623anti-parallel
Strand 3
A
608 610anti-parallel
Strand 4
A
401 408parallel
Strand 5
A
413 419anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 664first strand
Strand 2
A
668 673anti-parallel
Strand 3
A
504 509anti-parallel
Strand 4
A
704 706anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 541first strand
Strand 2
A
589 591anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 716first strand
Strand 2
A
720 723anti-parallel
Strand 3
A
729 731anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 354first strand
Strand 2
B
363 367anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 390first strand
Strand 2
B
620 623anti-parallel
Strand 3
B
608 610anti-parallel
Strand 4
B
401 408parallel
Strand 5
B
413 419anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
661 664first strand
Strand 2
B
668 673anti-parallel
Strand 3
B
504 509anti-parallel
Strand 4
B
704 705anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 541first strand
Strand 2
B
589 591anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
714 716first strand
Strand 2
B
720 723anti-parallel
Strand 3
B
729 731anti-parallel
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