Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZE1 entry

There are 2 chains in PDB entry 6ZE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 423GLN 637
B
 GLN 1ALA 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6ZE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
460 462Right-handed 310
Helix 2
AA2
A
463 476Right-handed alpha
Helix 3
AA3
A
502 508Right-handed alpha
Helix 4
AA4
A
513 524Right-handed alpha
Helix 5
AA5
A
526 533Right-handed alpha
Helix 6
AA6
A
535 538Right-handed 310
Helix 7
AA7
A
549 564Right-handed alpha
Helix 8
AA8
A
579 590Right-handed alpha
Helix 9
AA9
A
606 612Right-handed alpha
Helix 10
AB1
A
629 637Right-handed alpha
Helix 11
AB2
B
28 32Right-handed 310
Helix 12
AB3
B
87 91Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6ZE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
427 432anti-parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
45 51anti-parallel
Strand 5
B
33 39anti-parallel
Strand 6
B
92 99anti-parallel
Strand 7
B
115 119anti-parallel
Strand 8
B
11 12parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
427 432anti-parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
45 51anti-parallel
Strand 5
B
33 39anti-parallel
Strand 6
B
92 99anti-parallel
Strand 7
B
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
600 603parallel
Strand 4
A
453 458parallel
Strand 5
A
615 620parallel
Strand 6
A
623 628anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
540 541anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 23first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
68 73anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il