Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZEE entry

There are 3 chains in PDB entry 6ZEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	SER 6	ALA 299
Q	SER 6	ALA 299
B	SER 6	GLU 54

There are 84 helices in PDB entry 6ZEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	8	18	Right-handed alpha
Helix 2	AA2	P	31	49	Right-handed alpha
Helix 3	AA3	P	68	80	Right-handed alpha
Helix 4	AA4	P	99	114	Right-handed alpha
Helix 5	AA5	P	127	132	Right-handed alpha
Helix 6	AA6	P	135	144	Right-handed alpha
Helix 7	AA7	P	145	157	Right-handed alpha
Helix 8	AA8	P	183	188	Right-handed alpha
Helix 9	AA9	P	199	207	Right-handed alpha
Helix 10	AB1	P	228	240	Right-handed alpha
Helix 11	AB2	P	271	275	Right-handed 310
Helix 12	AB3	Q	8	18	Right-handed alpha
Helix 13	AB4	Q	31	49	Right-handed alpha
Helix 14	AB5	Q	68	80	Right-handed alpha
Helix 15	AB6	Q	99	114	Right-handed alpha
Helix 16	AB7	Q	127	132	Right-handed alpha
Helix 17	AB8	Q	135	144	Right-handed alpha
Helix 18	AB9	Q	145	157	Right-handed alpha
Helix 19	AC1	Q	183	188	Right-handed alpha
Helix 20	AC2	Q	199	207	Right-handed alpha
Helix 21	AC3	Q	228	240	Right-handed alpha
Helix 22	AC4	Q	271	275	Right-handed 310
Helix 23	AC5	B	8	18	Right-handed alpha
Helix 24	AC6	B	31	49	Right-handed alpha
Helix 25	AC7	B	68	80	Right-handed alpha
Helix 26	AC8	B	99	114	Right-handed alpha
Helix 27	AC9	B	127	132	Right-handed alpha
Helix 28	AD1	B	135	144	Right-handed alpha
Helix 29	AD2	B	145	157	Right-handed alpha
Helix 30	AD3	B	182	188	Right-handed alpha
Helix 31	AD4	B	199	207	Right-handed alpha
Helix 32	AD5	B	228	239	Right-handed alpha
Helix 33	AD6	B	271	275	Right-handed 310
Helix 34	AD7	A	8	18	Right-handed alpha
Helix 35	AD8	A	31	49	Right-handed alpha
Helix 36	AD9	A	68	80	Right-handed alpha
Helix 37	AE1	A	99	114	Right-handed alpha
Helix 38	AE2	A	127	132	Right-handed alpha
Helix 39	AE3	A	135	144	Right-handed alpha
Helix 40	AE4	A	145	157	Right-handed alpha
Helix 41	AE5	A	182	188	Right-handed alpha
Helix 42	AE6	A	199	207	Right-handed alpha
Helix 43	AE7	A	228	240	Right-handed alpha
Helix 44	AE8	A	271	275	Right-handed 310
Helix 45	AE9	I	8	19	Right-handed alpha
Helix 46	AF1	I	31	49	Right-handed alpha
Helix 47	AF2	I	68	80	Right-handed alpha
Helix 48	AF3	I	99	114	Right-handed alpha
Helix 49	AF4	I	127	132	Right-handed alpha
Helix 50	AF5	I	135	144	Right-handed alpha
Helix 51	AF6	I	145	157	Right-handed alpha
Helix 52	AF7	I	182	188	Right-handed alpha
Helix 53	AF8	I	199	207	Right-handed alpha
Helix 54	AF9	I	228	240	Right-handed alpha
Helix 55	AG1	I	271	275	Right-handed 310
Helix 56	AG2	K	8	18	Right-handed alpha
Helix 57	AG3	K	31	49	Right-handed alpha
Helix 58	AG4	K	68	80	Right-handed alpha
Helix 59	AG5	K	99	114	Right-handed alpha
Helix 60	AG6	K	127	132	Right-handed alpha
Helix 61	AG7	K	135	144	Right-handed alpha
Helix 62	AG8	K	145	157	Right-handed alpha
Helix 63	AG9	K	182	188	Right-handed alpha
Helix 64	AH1	K	199	207	Right-handed alpha
Helix 65	AH2	K	228	240	Right-handed alpha
Helix 66	AH3	K	271	275	Right-handed 310
Helix 67	AH4	W	540	545	Right-handed 310
Helix 68	AH5	W	546	564	Right-handed alpha
Helix 69	AH6	W	568	575	Right-handed 310
Helix 70	AH7	X	540	545	Right-handed 310
Helix 71	AH8	X	546	564	Right-handed alpha
Helix 72	AH9	X	568	575	Right-handed 310
Helix 73	AI1	D	540	545	Right-handed 310
Helix 74	AI2	D	546	564	Right-handed alpha
Helix 75	AI3	D	568	575	Right-handed 310
Helix 76	AI4	C	540	545	Right-handed 310
Helix 77	AI5	C	546	564	Right-handed alpha
Helix 78	AI6	C	568	575	Right-handed 310
Helix 79	AI7	U	540	545	Right-handed 310
Helix 80	AI8	U	546	564	Right-handed alpha
Helix 81	AI9	U	568	575	Right-handed 310
Helix 82	AJ1	V	540	545	Right-handed 310
Helix 83	AJ2	V	546	564	Right-handed alpha
Helix 84	AJ3	V	568	575	Right-handed 310

There are 24 sheets in PDB entry 6ZEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	52	55	first strand
Strand 2	P	162	165	parallel
Strand 3	P	169	171	anti-parallel
Strand 4	P	243	246	parallel
Strand 5	P	263	266	parallel
Strand 6	P	255	258	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	118	120	first strand
Strand 2	P	87	89	parallel
Strand 3	P	60	62	parallel
Strand 4	P	280	285	anti-parallel
Strand 5	P	290	297	anti-parallel
Strand 6	W	521	522	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	118	120	first strand
Strand 2	P	87	89	parallel
Strand 3	P	60	62	parallel
Strand 4	P	280	285	anti-parallel
Strand 5	P	290	297	anti-parallel
Strand 6	W	527	530	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	208	209	first strand
Strand 2	P	225	227	parallel
Strand 3	P	216	218	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	52	55	first strand
Strand 2	Q	162	165	parallel
Strand 3	Q	169	171	anti-parallel
Strand 4	Q	243	246	parallel
Strand 5	Q	263	266	parallel
Strand 6	Q	255	258	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	120	first strand
Strand 2	Q	87	89	parallel
Strand 3	Q	60	62	parallel
Strand 4	Q	280	285	anti-parallel
Strand 5	Q	290	297	anti-parallel
Strand 6	V	521	522	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	120	first strand
Strand 2	Q	87	89	parallel
Strand 3	Q	60	62	parallel
Strand 4	Q	280	285	anti-parallel
Strand 5	Q	290	297	anti-parallel
Strand 6	V	527	530	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	208	209	first strand
Strand 2	Q	225	227	parallel
Strand 3	Q	216	218	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	162	165	parallel
Strand 3	B	169	172	anti-parallel
Strand 4	B	243	246	parallel
Strand 5	B	263	266	parallel
Strand 6	B	255	258	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	87	89	parallel
Strand 3	B	59	62	parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	290	297	anti-parallel
Strand 6	D	521	522	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	87	89	parallel
Strand 3	B	59	62	parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	290	297	anti-parallel
Strand 6	D	527	530	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	225	227	parallel
Strand 3	B	216	218	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	162	165	parallel
Strand 3	A	169	171	anti-parallel
Strand 4	A	243	246	parallel
Strand 5	A	263	266	parallel
Strand 6	A	255	258	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	87	89	parallel
Strand 3	A	59	62	parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	290	297	anti-parallel
Strand 6	C	521	522	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	87	89	parallel
Strand 3	A	59	62	parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	290	297	anti-parallel
Strand 6	C	527	530	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	225	227	parallel
Strand 3	A	216	218	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	55	first strand
Strand 2	I	162	165	parallel
Strand 3	I	169	171	anti-parallel
Strand 4	I	243	246	parallel
Strand 5	I	263	266	parallel
Strand 6	I	255	258	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	120	first strand
Strand 2	I	87	89	parallel
Strand 3	I	60	62	parallel
Strand 4	I	280	285	anti-parallel
Strand 5	I	290	297	anti-parallel
Strand 6	U	521	522	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	120	first strand
Strand 2	I	87	89	parallel
Strand 3	I	60	62	parallel
Strand 4	I	280	285	anti-parallel
Strand 5	I	290	297	anti-parallel
Strand 6	U	527	530	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	208	209	first strand
Strand 2	I	225	227	parallel
Strand 3	I	216	218	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	55	first strand
Strand 2	K	162	165	parallel
Strand 3	K	169	171	anti-parallel
Strand 4	K	243	246	parallel
Strand 5	K	263	266	parallel
Strand 6	K	255	258	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	120	first strand
Strand 2	K	87	89	parallel
Strand 3	K	60	62	parallel
Strand 4	K	280	285	anti-parallel
Strand 5	K	290	297	anti-parallel
Strand 6	X	521	522	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	120	first strand
Strand 2	K	87	89	parallel
Strand 3	K	60	62	parallel
Strand 4	K	280	285	anti-parallel
Strand 5	K	290	297	anti-parallel
Strand 6	X	527	530	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	208	209	first strand
Strand 2	K	225	227	parallel
Strand 3	K	216	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZEE