Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZEP entry

There is 1 chain in PDB entry 6ZEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 26LEU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6ZEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 52Right-handed alpha
Helix 2
AA2
A
60 63Right-handed 310
Helix 3
AA3
A
86 95Right-handed alpha
Helix 4
AA4
A
98 110Right-handed alpha
Helix 5
AA5
A
119 141Right-handed alpha
Helix 6
AA6
A
196 211Right-handed alpha
Helix 7
AA7
A
213 218Right-handed alpha
Helix 8
AA8
A
232 236Right-handed 310
Helix 9
AA9
A
237 250Right-handed alpha
Helix 10
AB1
A
266 272Right-handed alpha
Helix 11
AB2
A
286 301Right-handed alpha
Helix 12
AB3
A
316 323Right-handed alpha
Helix 13
AB4
A
348 352Right-handed 310
Helix 14
AB5
A
353 373Right-handed alpha
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There are 2 sheets in PDB entry 6ZEP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
57 58anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
170 176parallel
Strand 5
A
254 260parallel
Strand 6
A
327 331parallel
Strand 7
A
278 281anti-parallel
Strand 8
A
305 308parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il