Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZGD entry

There are 5 chains in PDB entry 6ZGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	PHE 315
B	VAL 5	PHE 315
C	VAL 5	PHE 315
D	VAL 5	PHE 315
E	VAL 5	PHE 315

There are 30 helices in PDB entry 6ZGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	152	156	Right-handed 310
Helix 2	AA2	A	196	201	Right-handed alpha
Helix 3	AA3	A	201	214	Right-handed alpha
Helix 4	AA4	A	220	244	Right-handed alpha
Helix 5	AA5	A	253	282	Right-handed alpha
Helix 6	AA6	A	284	314	Right-handed alpha
Helix 7	AA7	B	152	156	Right-handed 310
Helix 8	AA8	B	196	201	Right-handed alpha
Helix 9	AA9	B	201	214	Right-handed alpha
Helix 10	AB1	B	220	244	Right-handed alpha
Helix 11	AB2	B	253	282	Right-handed alpha
Helix 12	AB3	B	284	314	Right-handed alpha
Helix 13	AB4	C	152	156	Right-handed 310
Helix 14	AB5	C	196	201	Right-handed alpha
Helix 15	AB6	C	201	214	Right-handed alpha
Helix 16	AB7	C	220	244	Right-handed alpha
Helix 17	AB8	C	253	282	Right-handed alpha
Helix 18	AB9	C	284	314	Right-handed alpha
Helix 19	AC1	D	152	156	Right-handed 310
Helix 20	AC2	D	196	201	Right-handed alpha
Helix 21	AC3	D	201	214	Right-handed alpha
Helix 22	AC4	D	220	244	Right-handed alpha
Helix 23	AC5	D	253	282	Right-handed alpha
Helix 24	AC6	D	284	314	Right-handed alpha
Helix 25	AC7	E	152	156	Right-handed 310
Helix 26	AC8	E	196	201	Right-handed alpha
Helix 27	AC9	E	201	214	Right-handed alpha
Helix 28	AD1	E	220	244	Right-handed alpha
Helix 29	AD2	E	253	282	Right-handed alpha
Helix 30	AD3	E	284	314	Right-handed alpha

There are 15 sheets in PDB entry 6ZGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	94	first strand
Strand 2	A	100	110	anti-parallel
Strand 3	A	36	47	anti-parallel
Strand 4	A	17	31	anti-parallel
Strand 5	A	141	144	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	130	132	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	183	192	anti-parallel
Strand 3	A	160	170	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	94	first strand
Strand 2	B	100	110	anti-parallel
Strand 3	B	36	47	anti-parallel
Strand 4	B	17	31	anti-parallel
Strand 5	B	141	144	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	130	132	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	183	192	anti-parallel
Strand 3	B	160	170	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	94	first strand
Strand 2	C	100	110	anti-parallel
Strand 3	C	36	47	anti-parallel
Strand 4	C	17	31	anti-parallel
Strand 5	C	141	144	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	130	132	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	183	192	anti-parallel
Strand 3	C	160	170	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	94	first strand
Strand 2	D	100	110	anti-parallel
Strand 3	D	36	47	anti-parallel
Strand 4	D	17	31	anti-parallel
Strand 5	D	141	144	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	130	132	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	183	192	anti-parallel
Strand 3	D	160	170	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	94	first strand
Strand 2	E	100	110	anti-parallel
Strand 3	E	36	47	anti-parallel
Strand 4	E	17	31	anti-parallel
Strand 5	E	141	144	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	130	132	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	128	first strand
Strand 2	E	183	192	anti-parallel
Strand 3	E	160	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZGD