Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZGF entry

There are 3 chains in PDB entry 6ZGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	GLU 1140
B	GLN 14	GLU 1140
C	GLN 14	GLU 1140

There are 78 helices in PDB entry 6ZGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	349	353	Right-handed 310
Helix 3	AA3	A	364	369	Right-handed 310
Helix 4	AA4	A	383	387	Right-handed 310
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	417	422	Right-handed alpha
Helix 7	AA7	A	438	443	Right-handed alpha
Helix 8	AA8	A	502	505	Right-handed 310
Helix 9	AA9	A	619	624	Right-handed alpha
Helix 10	AB1	A	632	636	Right-handed 310
Helix 11	AB2	A	733	739	Right-handed alpha
Helix 12	AB3	A	756	768	Right-handed alpha
Helix 13	AB4	A	768	779	Right-handed alpha
Helix 14	AB5	A	807	811	Right-handed 310
Helix 15	AB6	A	812	822	Right-handed alpha
Helix 16	AB7	A	832	837	Right-handed alpha
Helix 17	AB8	A	845	851	Right-handed alpha
Helix 18	AB9	A	862	877	Right-handed alpha
Helix 19	AC1	A	882	886	Right-handed 310
Helix 20	AC2	A	893	904	Right-handed alpha
Helix 21	AC3	A	908	915	Right-handed alpha
Helix 22	AC4	A	915	936	Right-handed alpha
Helix 23	AC5	A	937	941	Right-handed 310
Helix 24	AC6	A	945	961	Right-handed alpha
Helix 25	AC7	A	962	964	Right-handed 310
Helix 26	AC8	A	981	1029	Right-handed alpha
Helix 27	AC9	B	294	304	Right-handed alpha
Helix 28	AD1	B	349	353	Right-handed 310
Helix 29	AD2	B	364	369	Right-handed 310
Helix 30	AD3	B	383	387	Right-handed 310
Helix 31	AD4	B	405	410	Right-handed 310
Helix 32	AD5	B	417	422	Right-handed alpha
Helix 33	AD6	B	438	443	Right-handed alpha
Helix 34	AD7	B	502	505	Right-handed 310
Helix 35	AD8	B	619	624	Right-handed alpha
Helix 36	AD9	B	632	636	Right-handed 310
Helix 37	AE1	B	733	739	Right-handed alpha
Helix 38	AE2	B	756	768	Right-handed alpha
Helix 39	AE3	B	768	779	Right-handed alpha
Helix 40	AE4	B	807	811	Right-handed 310
Helix 41	AE5	B	812	822	Right-handed alpha
Helix 42	AE6	B	832	837	Right-handed alpha
Helix 43	AE7	B	845	851	Right-handed alpha
Helix 44	AE8	B	862	877	Right-handed alpha
Helix 45	AE9	B	882	886	Right-handed 310
Helix 46	AF1	B	893	904	Right-handed alpha
Helix 47	AF2	B	908	915	Right-handed alpha
Helix 48	AF3	B	915	936	Right-handed alpha
Helix 49	AF4	B	937	941	Right-handed 310
Helix 50	AF5	B	945	961	Right-handed alpha
Helix 51	AF6	B	962	964	Right-handed 310
Helix 52	AF7	B	981	1029	Right-handed alpha
Helix 53	AF8	C	294	304	Right-handed alpha
Helix 54	AF9	C	349	353	Right-handed 310
Helix 55	AG1	C	364	369	Right-handed 310
Helix 56	AG2	C	383	387	Right-handed 310
Helix 57	AG3	C	405	410	Right-handed 310
Helix 58	AG4	C	417	422	Right-handed alpha
Helix 59	AG5	C	438	443	Right-handed alpha
Helix 60	AG6	C	502	505	Right-handed 310
Helix 61	AG7	C	619	624	Right-handed alpha
Helix 62	AG8	C	632	636	Right-handed 310
Helix 63	AG9	C	733	739	Right-handed alpha
Helix 64	AH1	C	756	768	Right-handed alpha
Helix 65	AH2	C	768	779	Right-handed alpha
Helix 66	AH3	C	807	811	Right-handed 310
Helix 67	AH4	C	812	822	Right-handed alpha
Helix 68	AH5	C	832	837	Right-handed alpha
Helix 69	AH6	C	845	851	Right-handed alpha
Helix 70	AH7	C	862	877	Right-handed alpha
Helix 71	AH8	C	882	886	Right-handed 310
Helix 72	AH9	C	893	904	Right-handed alpha
Helix 73	AI1	C	908	915	Right-handed alpha
Helix 74	AI2	C	915	936	Right-handed alpha
Helix 75	AI3	C	937	941	Right-handed 310
Helix 76	AI4	C	945	961	Right-handed alpha
Helix 77	AI5	C	962	964	Right-handed 310
Helix 78	AI6	C	981	1029	Right-handed alpha

There are 48 sheets in PDB entry 6ZGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	60	64	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	188	197	anti-parallel
Strand 6	A	200	209	anti-parallel
Strand 7	A	220	229	anti-parallel
Strand 8	A	33	37	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	245	anti-parallel
Strand 3	A	133	143	parallel
Strand 4	A	155	163	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	245	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	120	anti-parallel
Strand 5	A	127	131	anti-parallel
Strand 6	A	168	170	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	598	first strand
Strand 2	A	609	612	anti-parallel
Strand 3	A	648	651	anti-parallel
Strand 4	A	643	645	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	687	692	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	699	first strand
Strand 2	B	783	785	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	711	first strand
Strand 2	A	1068	1074	anti-parallel
Strand 3	A	1090	1093	anti-parallel
Strand 4	A	1098	1102	anti-parallel
Strand 5	A	1105	1110	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	724	first strand
Strand 2	A	1055	1065	anti-parallel
Strand 3	A	1043	1052	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	732	first strand
Strand 2	A	854	857	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	C	697	699	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1116	1118	first strand
Strand 2	A	1083	1086	anti-parallel
Strand 3	A	1077	1078	anti-parallel
Strand 4	A	1129	1130	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	200	209	anti-parallel
Strand 7	B	220	229	anti-parallel
Strand 8	B	33	37	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	245	anti-parallel
Strand 3	B	133	143	parallel
Strand 4	B	155	163	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	245	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	120	anti-parallel
Strand 5	B	127	131	anti-parallel
Strand 6	B	168	170	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel
Strand 3	B	391	392	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	598	first strand
Strand 2	B	609	612	anti-parallel
Strand 3	B	648	651	anti-parallel
Strand 4	B	643	645	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	687	692	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	699	first strand
Strand 2	C	783	785	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	711	first strand
Strand 2	B	1068	1074	anti-parallel
Strand 3	B	1090	1093	anti-parallel
Strand 4	B	1098	1102	anti-parallel
Strand 5	B	1105	1110	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	724	first strand
Strand 2	B	1055	1065	anti-parallel
Strand 3	B	1043	1052	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	854	857	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1116	1118	first strand
Strand 2	B	1083	1086	anti-parallel
Strand 3	B	1077	1078	anti-parallel
Strand 4	B	1129	1130	parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	60	64	anti-parallel
Strand 3	C	264	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	209	anti-parallel
Strand 7	C	220	229	anti-parallel
Strand 8	C	33	37	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	245	anti-parallel
Strand 3	C	133	143	parallel
Strand 4	C	155	163	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	245	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	116	120	anti-parallel
Strand 5	C	127	131	anti-parallel
Strand 6	C	168	170	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	328	first strand
Strand 2	C	538	543	parallel
Strand 3	C	546	554	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	573	577	anti-parallel
Strand 6	C	565	567	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	598	first strand
Strand 2	C	609	612	anti-parallel
Strand 3	C	648	651	anti-parallel
Strand 4	C	643	645	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	687	692	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	711	first strand
Strand 2	C	1068	1074	anti-parallel
Strand 3	C	1090	1093	anti-parallel
Strand 4	C	1098	1102	anti-parallel
Strand 5	C	1105	1110	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	714	724	first strand
Strand 2	C	1055	1065	anti-parallel
Strand 3	C	1043	1052	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	729	732	first strand
Strand 2	C	854	857	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1116	1118	first strand
Strand 2	C	1083	1086	anti-parallel
Strand 3	C	1077	1078	anti-parallel
Strand 4	C	1129	1130	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZGF