Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZGV entry

There are 4 chains in PDB entry 6ZGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 392
B	ALA 2	LEU 392
E	ALA 2	LEU 392
D	GLN 8	GLU 273

There are 54 helices in PDB entry 6ZGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	25	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	105	117	Right-handed alpha
Helix 4	AA4	A	140	157	Right-handed alpha
Helix 5	AA5	A	162	179	Right-handed alpha
Helix 6	AA6	A	184	193	Right-handed alpha
Helix 7	AA7	A	230	249	Right-handed alpha
Helix 8	AA8	A	259	267	Right-handed alpha
Helix 9	AA9	A	271	297	Right-handed alpha
Helix 10	AB1	A	299	317	Right-handed alpha
Helix 11	AB2	A	322	333	Right-handed alpha
Helix 12	AB3	A	360	372	Right-handed alpha
Helix 13	AB4	B	8	25	Right-handed alpha
Helix 14	AB5	B	45	49	Right-handed 310
Helix 15	AB6	B	106	116	Right-handed alpha
Helix 16	AB7	B	140	157	Right-handed alpha
Helix 17	AB8	B	162	178	Right-handed alpha
Helix 18	AB9	B	184	193	Right-handed alpha
Helix 19	AC1	B	235	251	Right-handed alpha
Helix 20	AC2	B	254	258	Right-handed 310
Helix 21	AC3	B	259	265	Right-handed alpha
Helix 22	AC4	B	271	297	Right-handed alpha
Helix 23	AC5	B	299	317	Right-handed alpha
Helix 24	AC6	B	322	334	Right-handed alpha
Helix 25	AC7	B	360	371	Right-handed alpha
Helix 26	AC8	E	8	25	Right-handed alpha
Helix 27	AC9	E	45	49	Right-handed 310
Helix 28	AD1	E	106	116	Right-handed alpha
Helix 29	AD2	E	140	157	Right-handed alpha
Helix 30	AD3	E	162	179	Right-handed alpha
Helix 31	AD4	E	184	193	Right-handed alpha
Helix 32	AD5	E	230	251	Right-handed alpha
Helix 33	AD6	E	254	258	Right-handed 310
Helix 34	AD7	E	259	266	Right-handed alpha
Helix 35	AD8	E	267	270	Right-handed 310
Helix 36	AD9	E	271	297	Right-handed alpha
Helix 37	AE1	E	299	317	Right-handed alpha
Helix 38	AE2	E	322	334	Right-handed alpha
Helix 39	AE3	E	360	372	Right-handed alpha
Helix 40	AE4	D	10	25	Right-handed alpha
Helix 41	AE5	D	42	46	Right-handed 310
Helix 42	AE6	D	104	116	Right-handed alpha
Helix 43	AE7	D	140	157	Right-handed alpha
Helix 44	AE8	D	162	177	Right-handed alpha
Helix 45	AE9	D	185	193	Right-handed alpha
Helix 46	AF1	D	231	234	Right-handed 310
Helix 47	AF2	D	235	251	Right-handed alpha
Helix 48	AF3	D	254	258	Right-handed 310
Helix 49	AF4	D	259	265	Right-handed alpha
Helix 50	AF5	D	266	270	Right-handed 310
Helix 51	AF6	D	272	297	Right-handed alpha
Helix 52	AF7	D	299	317	Right-handed alpha
Helix 53	AF8	D	322	334	Right-handed alpha
Helix 54	AF9	D	360	371	Right-handed alpha

There are 10 sheets in PDB entry 6ZGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	72	77	anti-parallel
Strand 3	A	125	131	parallel
Strand 4	A	54	67	anti-parallel
Strand 5	A	30	39	anti-parallel
Strand 6	A	388	391	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	208	212	anti-parallel
Strand 4	B	208	212	anti-parallel
Strand 5	B	197	202	anti-parallel
Strand 6	B	51	52	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	343	first strand
Strand 2	A	349	357	anti-parallel
Strand 3	A	218	228	anti-parallel
Strand 4	A	377	381	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	124	131	parallel
Strand 4	B	54	68	anti-parallel
Strand 5	B	30	39	anti-parallel
Strand 6	B	388	391	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	343	first strand
Strand 2	B	349	356	anti-parallel
Strand 3	B	219	228	anti-parallel
Strand 4	B	377	381	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	91	first strand
Strand 2	E	72	77	anti-parallel
Strand 3	E	125	131	parallel
Strand 4	E	51	67	anti-parallel
Strand 5	E	30	41	anti-parallel
Strand 6	E	388	391	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	91	first strand
Strand 2	E	72	77	anti-parallel
Strand 3	E	125	131	parallel
Strand 4	E	51	67	anti-parallel
Strand 5	E	197	202	anti-parallel
Strand 6	E	208	212	anti-parallel
Strand 7	D	208	212	anti-parallel
Strand 8	D	197	202	anti-parallel
Strand 9	D	51	52	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	343	first strand
Strand 2	E	349	357	anti-parallel
Strand 3	E	218	228	anti-parallel
Strand 4	E	377	380	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	91	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	124	131	parallel
Strand 4	D	54	68	anti-parallel
Strand 5	D	30	39	anti-parallel
Strand 6	D	388	391	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	344	first strand
Strand 2	D	349	357	anti-parallel
Strand 3	D	218	228	anti-parallel
Strand 4	D	377	381	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZGV