Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZJ8 entry

There are 5 chains in PDB entry 6ZJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 16	ASP 156
B	GLU 16	ASP 156
C	ASP 21	LEU 155
D	ASP 21	SER 154
E	ALA 15	ILE 132

There are 38 helices in PDB entry 6ZJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	50	57	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	78	88	Right-handed alpha
Helix 5	AA5	A	138	156	Right-handed alpha
Helix 6	AA6	B	17	32	Right-handed alpha
Helix 7	AA7	B	50	57	Right-handed alpha
Helix 8	AA8	B	60	64	Right-handed 310
Helix 9	AA9	B	78	88	Right-handed alpha
Helix 10	AB1	B	138	156	Right-handed alpha
Helix 11	AB2	C	22	32	Right-handed alpha
Helix 12	AB3	C	50	58	Right-handed alpha
Helix 13	AB4	C	60	64	Right-handed 310
Helix 14	AB5	C	79	88	Right-handed alpha
Helix 15	AB6	C	140	155	Right-handed alpha
Helix 16	AB7	D	22	32	Right-handed alpha
Helix 17	AB8	D	50	58	Right-handed alpha
Helix 18	AB9	D	60	64	Right-handed 310
Helix 19	AC1	D	83	89	Right-handed alpha
Helix 20	AC2	D	140	154	Right-handed alpha
Helix 21	AC3	E	16	32	Right-handed alpha
Helix 22	AC4	E	50	57	Right-handed alpha
Helix 23	AC5	E	60	64	Right-handed 310
Helix 24	AC6	E	78	88	Right-handed alpha
Helix 25	AC7	E	138	150	Right-handed alpha
Helix 26	AC8	F	17	32	Right-handed alpha
Helix 27	AC9	F	50	57	Right-handed alpha
Helix 28	AD1	F	60	64	Right-handed 310
Helix 29	AD2	F	78	88	Right-handed alpha
Helix 30	AD3	F	138	152	Right-handed alpha
Helix 31	AD4	G	21	32	Right-handed alpha
Helix 32	AD5	G	50	57	Right-handed alpha
Helix 33	AD6	G	60	64	Right-handed 310
Helix 34	AD7	G	77	89	Right-handed alpha
Helix 35	AD8	G	140	154	Right-handed alpha
Helix 36	AD9	H	22	32	Right-handed alpha
Helix 37	AE1	H	50	58	Right-handed alpha
Helix 38	AE2	H	140	154	Right-handed alpha

There are 8 sheets in PDB entry 6ZJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	128	137	anti-parallel
Strand 4	A	110	122	anti-parallel
Strand 5	A	99	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	130	137	anti-parallel
Strand 4	B	110	120	anti-parallel
Strand 5	B	99	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	37	41	anti-parallel
Strand 3	C	128	137	anti-parallel
Strand 4	C	110	122	anti-parallel
Strand 5	C	99	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	37	41	anti-parallel
Strand 3	D	128	137	anti-parallel
Strand 4	D	110	122	anti-parallel
Strand 5	D	99	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	37	41	anti-parallel
Strand 3	E	128	137	anti-parallel
Strand 4	E	110	122	anti-parallel
Strand 5	E	99	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	37	41	anti-parallel
Strand 3	F	128	137	anti-parallel
Strand 4	F	110	122	anti-parallel
Strand 5	F	99	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	49	first strand
Strand 2	G	37	41	anti-parallel
Strand 3	G	128	137	anti-parallel
Strand 4	G	110	122	anti-parallel
Strand 5	G	99	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	49	first strand
Strand 2	H	37	40	anti-parallel
Strand 3	H	130	137	anti-parallel
Strand 4	H	110	121	anti-parallel
Strand 5	H	99	107	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZJ8