Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZK9 entry

There are 19 chains in PDB entry 6ZK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	LYS 9	GLN 438
2	ALA 5	LEU 217
3	SER 6	GLU 693
4	SER 45	HIS 84
4	GLY 86	ARG 430
5	THR 7	GLU 214
6	SER 24	ARG 179
9	THR 1	ARG 176
a	PRO 32	HIS 75
b	GLY 1	HIS 95
c	THR 8	LYS 133
d	LEU 1	VAL 340
e	LEU 13	ALA 98
f	LEU 3	ILE 115
g	THR 14	PRO 127
h	SER 2	LEU 112
i	MET 1	LYS 145
j	PRO 5	VAL 86
q	VAL 5	PHE 35

There are148 helices in PDB entry 6ZK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	16	20	Right-handed 310
Helix 2	AA2	1	32	38	Right-handed alpha
Helix 3	AA3	1	44	50	Right-handed alpha
Helix 4	AA4	1	51	64	Right-handed alpha
Helix 5	AA5	1	74	80	Right-handed alpha
Helix 6	AA6	1	105	114	Right-handed alpha
Helix 7	AA7	1	114	129	Right-handed alpha
Helix 8	AA8	1	142	159	Right-handed alpha
Helix 9	AA9	1	165	169	Right-handed 310
Helix 10	AB1	1	183	187	Right-handed 310
Helix 11	AB2	1	188	197	Right-handed alpha
Helix 12	AB3	1	214	218	Right-handed 310
Helix 13	AB4	1	225	230	Right-handed alpha
Helix 14	AB5	1	230	238	Right-handed alpha
Helix 15	AB6	1	238	243	Right-handed alpha
Helix 16	AB7	1	275	284	Right-handed alpha
Helix 17	AB8	1	290	292	Right-handed 310
Helix 18	AB9	1	309	313	Right-handed alpha
Helix 19	AC1	1	318	325	Right-handed alpha
Helix 20	AC2	1	342	357	Right-handed alpha
Helix 21	AC3	1	362	382	Right-handed alpha
Helix 22	AC4	1	386	400	Right-handed alpha
Helix 23	AC5	1	406	438	Right-handed alpha
Helix 24	AC6	2	24	36	Right-handed alpha
Helix 25	AC7	2	42	45	Right-handed 310
Helix 26	AC8	2	46	59	Right-handed alpha
Helix 27	AC9	2	64	74	Right-handed alpha
Helix 28	AD1	2	76	87	Right-handed alpha
Helix 29	AD2	2	105	111	Right-handed alpha
Helix 30	AD3	2	112	125	Right-handed alpha
Helix 31	AD4	2	147	151	Right-handed 310
Helix 32	AD5	2	165	178	Right-handed alpha
Helix 33	AD6	3	25	32	Right-handed alpha
Helix 34	AD7	3	83	100	Right-handed alpha
Helix 35	AD8	3	114	124	Right-handed alpha
Helix 36	AD9	3	150	153	Right-handed 310
Helix 37	AE1	3	157	166	Right-handed alpha
Helix 38	AE2	3	177	181	Right-handed 310
Helix 39	AE3	3	197	203	Right-handed alpha
Helix 40	AE4	3	218	222	Right-handed 310
Helix 41	AE5	3	264	270	Right-handed alpha
Helix 42	AE6	3	271	276	Right-handed 310
Helix 43	AE7	3	295	308	Right-handed alpha
Helix 44	AE8	3	311	313	Right-handed 310
Helix 45	AE9	3	324	338	Right-handed alpha
Helix 46	AF1	3	359	363	Right-handed 310
Helix 47	AF2	3	368	374	Right-handed 310
Helix 48	AF3	3	383	388	Right-handed alpha
Helix 49	AF4	3	388	403	Right-handed alpha
Helix 50	AF5	3	426	433	Right-handed alpha
Helix 51	AF6	3	437	446	Right-handed alpha
Helix 52	AF7	3	456	460	Right-handed 310
Helix 53	AF8	3	462	479	Right-handed alpha
Helix 54	AF9	3	498	505	Right-handed alpha
Helix 55	AG1	3	511	517	Right-handed alpha
Helix 56	AG2	3	565	569	Right-handed 310
Helix 57	AG3	3	595	607	Right-handed alpha
Helix 58	AG4	3	615	627	Right-handed alpha
Helix 59	AG5	3	628	632	Right-handed 310
Helix 60	AG6	3	641	650	Right-handed alpha
Helix 61	AG7	3	667	671	Right-handed 310
Helix 62	AG8	3	675	680	Right-handed alpha
Helix 63	AG9	3	681	693	Right-handed alpha
Helix 64	AH1	4	86	91	Right-handed alpha
Helix 65	AH2	4	92	94	Right-handed 310
Helix 66	AH3	4	95	100	Right-handed alpha
Helix 67	AH4	4	100	105	Right-handed alpha
Helix 68	AH5	4	110	127	Right-handed alpha
Helix 69	AH6	4	131	162	Right-handed alpha
Helix 70	AH7	4	164	186	Right-handed alpha
Helix 71	AH8	4	206	230	Right-handed alpha
Helix 72	AH9	4	232	238	Right-handed alpha
Helix 73	AI1	4	246	253	Right-handed alpha
Helix 74	AI2	4	257	262	Right-handed alpha
Helix 75	AI3	4	268	273	Right-handed alpha
Helix 76	AI4	4	292	317	Right-handed alpha
Helix 77	AI5	4	334	339	Right-handed alpha
Helix 78	AI6	4	341	354	Right-handed alpha
Helix 79	AI7	4	393	406	Right-handed alpha
Helix 80	AI8	4	410	421	Right-handed alpha
Helix 81	AI9	4	424	430	Right-handed alpha
Helix 82	AJ1	5	15	33	Right-handed alpha
Helix 83	AJ2	5	56	67	Right-handed alpha
Helix 84	AJ3	5	126	139	Right-handed alpha
Helix 85	AJ4	5	206	210	Right-handed 310
Helix 86	AJ5	6	25	44	Right-handed alpha
Helix 87	AJ6	6	53	64	Right-handed alpha
Helix 88	AJ7	6	68	73	Right-handed 310
Helix 89	AJ8	6	96	107	Right-handed alpha
Helix 90	AJ9	6	117	123	Right-handed alpha
Helix 91	AK1	6	124	127	Right-handed 310
Helix 92	AK2	6	135	139	Right-handed 310
Helix 93	AK3	6	152	169	Right-handed alpha
Helix 94	AK4	6	171	179	Right-handed alpha
Helix 95	AK5	9	13	27	Right-handed alpha
Helix 96	AK6	9	27	42	Right-handed alpha
Helix 97	AK7	9	81	87	Right-handed alpha
Helix 98	AK8	9	120	126	Right-handed alpha
Helix 99	AK9	9	143	146	Right-handed 310
Helix 100	AL1	9	150	173	Right-handed alpha
Helix 101	AL2	9	174	176	Right-handed 310
Helix 102	AL3	a	41	46	Right-handed 310
Helix 103	AL4	a	49	59	Right-handed alpha
Helix 104	AL5	a	60	62	Right-handed 310
Helix 105	AL6	b	22	29	Right-handed 310
Helix 106	AL7	b	39	46	Right-handed alpha
Helix 107	AL8	b	63	67	Right-handed 310
Helix 108	AL9	c	27	32	Right-handed alpha
Helix 109	AM1	c	49	53	Right-handed 310
Helix 110	AM2	c	77	82	Right-handed 310
Helix 111	AM3	c	88	99	Right-handed alpha
Helix 112	AM4	c	117	123	Right-handed 310
Helix 113	AM5	d	2	6	Right-handed 310
Helix 114	AM6	d	28	40	Right-handed alpha
Helix 115	AM7	d	52	63	Right-handed 310
Helix 116	AM8	d	77	86	Right-handed alpha
Helix 117	AM9	d	105	111	Right-handed alpha
Helix 118	AN1	d	111	124	Right-handed alpha
Helix 119	AN2	d	143	160	Right-handed alpha
Helix 120	AN3	d	178	184	Right-handed alpha
Helix 121	AN4	d	207	220	Right-handed alpha
Helix 122	AN5	d	221	224	Right-handed 310
Helix 123	AN6	d	238	249	Right-handed alpha
Helix 124	AN7	d	280	288	Right-handed alpha
Helix 125	AN8	d	300	304	Right-handed 310
Helix 126	AN9	d	309	319	Right-handed alpha
Helix 127	AO1	e	26	28	Right-handed 310
Helix 128	AO2	e	29	47	Right-handed alpha
Helix 129	AO3	e	82	97	Right-handed alpha
Helix 130	AO4	f	18	35	Right-handed alpha
Helix 131	AO5	f	41	61	Right-handed alpha
Helix 132	AO6	f	63	72	Right-handed alpha
Helix 133	AO7	f	75	97	Right-handed alpha
Helix 134	AO8	g	23	49	Right-handed alpha
Helix 135	AO9	g	54	69	Right-handed alpha
Helix 136	AP1	g	74	94	Right-handed alpha
Helix 137	AP2	g	98	104	Right-handed alpha
Helix 138	AP3	g	116	124	Right-handed alpha
Helix 139	AP4	h	4	16	Right-handed alpha
Helix 140	AP5	h	52	56	Right-handed 310
Helix 141	AP6	i	2	17	Right-handed alpha
Helix 142	AP7	i	19	31	Right-handed alpha
Helix 143	AP8	i	78	82	Right-handed 310
Helix 144	AP9	i	83	91	Right-handed alpha
Helix 145	AQ1	j	7	22	Right-handed alpha
Helix 146	AQ2	j	43	59	Right-handed alpha
Helix 147	AQ3	j	72	83	Right-handed alpha
Helix 148	AQ4	q	30	35	Right-handed alpha

There are 32 sheets in PDB entry 6ZK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	174	179	first strand
Strand 2	1	133	138	parallel
Strand 3	1	92	97	parallel
Strand 4	1	220	224	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	266	271	first strand
Strand 2	1	253	260	anti-parallel
Strand 3	1	333	338	parallel
Strand 4	1	294	298	anti-parallel
Strand 5	1	307	308	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	137	142	first strand
Strand 2	2	98	103	parallel
Strand 3	2	154	156	anti-parallel
Strand 4	2	159	161	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	16	20	first strand
Strand 2	3	9	13	anti-parallel
Strand 3	3	78	80	parallel
Strand 4	3	56	59	anti-parallel
Strand 5	3	66	67	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	146	148	first strand
Strand 2	3	208	210	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	173	175	first strand
Strand 2	3	182	184	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	223	228	first strand
Strand 2	3	237	242	anti-parallel
Strand 3	3	247	252	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	291	293	first strand
Strand 2	3	283	285	anti-parallel
Strand 3	3	559	562	anti-parallel
Strand 4	3	542	547	parallel
Strand 5	3	521	525	parallel
Strand 6	3	315	319	parallel
Strand 7	3	343	345	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	420	423	first strand
Strand 2	3	405	409	parallel
Strand 3	3	376	380	parallel
Strand 4	3	449	454	parallel
Strand 5	3	490	493	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	572	574	first strand
Strand 2	3	580	582	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	47	51	first strand
Strand 2	4	63	68	anti-parallel
Strand 3	4	73	79	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	194	195	first strand
Strand 2	4	198	199	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	285	287	first strand
Strand 2	9	2	4	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	361	369	first strand
Strand 2	4	372	380	anti-parallel
Strand 3	4	388	392	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	74	82	first strand
Strand 2	5	90	98	anti-parallel
Strand 3	5	103	111	anti-parallel
Strand 4	5	48	52	parallel
Strand 5	5	37	42	anti-parallel
Strand 6	h	66	70	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	117	118	first strand
Strand 2	5	142	143	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	172	177	first strand
Strand 2	5	182	187	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	47	51	first strand
Strand 2	6	85	89	parallel
Strand 3	6	112	116	parallel
Strand 4	6	144	146	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	65	67	first strand
Strand 2	9	131	133	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	92	98	first strand
Strand 2	9	104	112	anti-parallel
Strand 3	9	148	149	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	3	4	first strand
Strand 2	b	10	11	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	50	52	first strand
Strand 2	b	90	93	parallel
Strand 3	b	82	83	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	56	59	first strand
Strand 2	b	71	74	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	11	12	first strand
Strand 2	g	15	16	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	84	86	first strand
Strand 2	c	55	59	anti-parallel
Strand 3	c	34	38	anti-parallel
Strand 4	c	102	105	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	64	66	first strand
Strand 2	c	73	75	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	68	72	first strand
Strand 2	d	44	49	parallel
Strand 3	d	20	24	parallel
Strand 4	d	90	93	parallel
Strand 5	d	128	132	parallel
Strand 6	d	164	168	parallel
Strand 7	d	227	230	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	171	172	first strand
Strand 2	d	205	206	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	201	202	first strand
Strand 2	d	236	237	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	52	57	first strand
Strand 2	e	15	23	parallel
Strand 3	e	63	68	anti-parallel
Strand 4	e	73	77	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	37	41	first strand
Strand 2	i	47	50	anti-parallel
Strand 3	i	60	63	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	67	68	first strand
Strand 2	i	71	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZK9