Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZM1 entry

There are 3 chains in PDB entry 6ZM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	TRP 552
B	VAL 84	PHE 1016
C	CYS 1	CYS 1

There are 76 helices in PDB entry 6ZM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	5	Right-handed 310
Helix 2	AA2	A	17	21	Right-handed 310
Helix 3	AA3	A	27	34	Right-handed alpha
Helix 4	AA4	A	69	77	Right-handed alpha
Helix 5	AA5	A	84	108	Right-handed alpha
Helix 6	AA6	A	109	111	Right-handed 310
Helix 7	AA7	A	118	141	Right-handed alpha
Helix 8	AA8	A	153	157	Right-handed 310
Helix 9	AA9	A	166	185	Right-handed alpha
Helix 10	AB1	A	196	213	Right-handed alpha
Helix 11	AB2	A	229	236	Right-handed alpha
Helix 12	AB3	A	238	244	Right-handed alpha
Helix 13	AB4	A	285	289	Right-handed 310
Helix 14	AB5	A	305	313	Right-handed alpha
Helix 15	AB6	A	339	344	Right-handed alpha
Helix 16	AB7	A	406	422	Right-handed alpha
Helix 17	AB8	A	426	442	Right-handed alpha
Helix 18	AB9	A	447	451	Right-handed 310
Helix 19	AC1	A	469	485	Right-handed alpha
Helix 20	AC2	A	491	499	Right-handed alpha
Helix 21	AC3	A	501	513	Right-handed alpha
Helix 22	AC4	A	517	521	Right-handed 310
Helix 23	AC5	A	535	542	Right-handed alpha
Helix 24	AC6	B	93	97	Right-handed 310
Helix 25	AC7	B	108	113	Right-handed alpha
Helix 26	AC8	B	233	249	Right-handed alpha
Helix 27	AC9	B	377	384	Right-handed alpha
Helix 28	AD1	B	409	417	Right-handed alpha
Helix 29	AD2	B	604	608	Right-handed 310
Helix 30	AD3	B	725	729	Right-handed 310
Helix 31	AD4	B	781	786	Right-handed alpha
Helix 32	AD5	B	817	822	Right-handed alpha
Helix 33	AD6	B	890	896	Right-handed alpha
Helix 34	AD7	B	910	914	Right-handed 310
Helix 35	AD8	B	939	943	Right-handed 310
Helix 36	AD9	B	961	967	Right-handed alpha
Helix 37	AE1	C	17	23	Right-handed 310
Helix 38	AE2	C	24	39	Right-handed alpha
Helix 39	AE3	C	48	53	Right-handed alpha
Helix 40	AE4	C	68	77	Right-handed alpha
Helix 41	AE5	C	84	110	Right-handed alpha
Helix 42	AE6	C	112	116	Right-handed 310
Helix 43	AE7	C	118	142	Right-handed alpha
Helix 44	AE8	C	154	160	Right-handed 310
Helix 45	AE9	C	166	185	Right-handed alpha
Helix 46	AF1	C	196	213	Right-handed alpha
Helix 47	AF2	C	226	236	Right-handed alpha
Helix 48	AF3	C	238	244	Right-handed alpha
Helix 49	AF4	C	252	262	Right-handed 310
Helix 50	AF5	C	285	289	Right-handed 310
Helix 51	AF6	C	293	297	Right-handed 310
Helix 52	AF7	C	305	312	Right-handed alpha
Helix 53	AF8	C	340	344	Right-handed alpha
Helix 54	AF9	C	407	421	Right-handed alpha
Helix 55	AG1	C	425	442	Right-handed alpha
Helix 56	AG2	C	469	485	Right-handed alpha
Helix 57	AG3	C	490	499	Right-handed alpha
Helix 58	AG4	C	500	514	Right-handed alpha
Helix 59	AG5	C	516	522	Right-handed 310
Helix 60	AG6	C	535	543	Right-handed alpha
Helix 61	AG7	D	233	248	Right-handed alpha
Helix 62	AG8	D	251	255	Right-handed 310
Helix 63	AG9	D	294	300	Right-handed alpha
Helix 64	AH1	D	376	384	Right-handed alpha
Helix 65	AH2	D	409	417	Right-handed alpha
Helix 66	AH3	D	535	539	Right-handed 310
Helix 67	AH4	D	584	587	Right-handed 310
Helix 68	AH5	D	602	608	Right-handed 310
Helix 69	AH6	D	725	729	Right-handed 310
Helix 70	AH7	D	779	786	Right-handed alpha
Helix 71	AH8	D	815	821	Right-handed alpha
Helix 72	AH9	D	889	895	Right-handed alpha
Helix 73	AI1	D	908	914	Right-handed 310
Helix 74	AI2	D	939	941	Right-handed 310
Helix 75	AI3	D	961	966	Right-handed alpha
Helix 76	AI4	D	967	969	Right-handed 310

There are 23 sheets in PDB entry 6ZM1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	402	405	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	90	92	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	178	182	anti-parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	156	159	parallel
Strand 5	B	162	164	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	140	144	anti-parallel

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There are 20 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	342	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	303	308	anti-parallel
Strand 4	B	215	223	anti-parallel
Strand 5	B	1007	1015	anti-parallel
Strand 6	B	975	980	anti-parallel
Strand 7	B	953	957	anti-parallel
Strand 8	B	873	880	anti-parallel
Strand 9	B	861	868	anti-parallel
Strand 10	B	760	769	anti-parallel
Strand 11	B	741	756	anti-parallel
Strand 12	B	706	715	anti-parallel
Strand 13	B	686	697	anti-parallel
Strand 14	B	617	627	anti-parallel
Strand 15	B	590	600	anti-parallel
Strand 16	B	569	580	anti-parallel
Strand 17	B	552	560	anti-parallel
Strand 18	B	501	514	anti-parallel
Strand 19	B	485	498	anti-parallel
Strand 20	B	441	443	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	1006	1009	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	319	324	anti-parallel
Strand 3	B	345	351	anti-parallel
Strand 4	B	358	364	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	423	427	anti-parallel
Strand 3	B	450	455	anti-parallel
Strand 4	B	480	485	anti-parallel
Strand 5	B	517	519	anti-parallel
Strand 6	B	547	549	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	460	first strand
Strand 2	B	475	477	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	734	737	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	879	881	first strand
Strand 2	B	948	950	anti-parallel
Strand 3	B	984	986	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	265	first strand
Strand 2	B	271	278	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	744	first strand
Strand 2	B	772	777	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	850	853	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	392	first strand
Strand 2	C	396	398	anti-parallel

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There are 23 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	312	first strand
Strand 2	D	214	224	anti-parallel
Strand 3	D	1006	1016	anti-parallel
Strand 4	D	972	980	anti-parallel
Strand 5	D	948	959	anti-parallel
Strand 6	D	872	882	anti-parallel
Strand 7	D	859	869	anti-parallel
Strand 8	D	760	778	anti-parallel
Strand 9	D	739	755	anti-parallel
Strand 10	D	704	716	anti-parallel
Strand 11	D	686	699	anti-parallel
Strand 12	D	613	627	anti-parallel
Strand 13	D	589	600	anti-parallel
Strand 14	D	569	580	anti-parallel
Strand 15	D	543	565	anti-parallel
Strand 16	D	501	524	anti-parallel
Strand 17	D	475	498	anti-parallel
Strand 18	D	441	460	anti-parallel
Strand 19	D	421	435	anti-parallel
Strand 20	D	357	371	anti-parallel
Strand 21	D	338	352	anti-parallel
Strand 22	D	319	331	anti-parallel
Strand 23	D	304	316	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	722	first strand
Strand 2	D	734	737	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	769	first strand
Strand 2	D	860	864	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	943	945	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	948	951	first strand
Strand 2	D	983	986	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	265	first strand
Strand 2	D	271	278	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	640	first strand
Strand 2	D	674	677	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	804	807	first strand
Strand 2	D	849	853	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZM1