Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZMD entry

There are 2 chains in PDB entry 6ZMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26PHE 548
B
 GLY 102THR 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6ZMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 83Right-handed alpha
Helix 2
AA2
A
95 98Right-handed 310
Helix 3
AA3
A
105 113Right-handed alpha
Helix 4
AA4
A
141 162Right-handed alpha
Helix 5
AA5
A
177 191Right-handed alpha
Helix 6
AA6
A
201 210Right-handed alpha
Helix 7
AA7
A
254 275Right-handed alpha
Helix 8
AA8
A
277 280Right-handed 310
Helix 9
AA9
A
281 299Right-handed alpha
Helix 10
AB1
A
324 331Right-handed alpha
Helix 11
AB2
A
331 338Right-handed alpha
Helix 12
AB3
A
338 350Right-handed alpha
Helix 13
AB4
A
352 356Right-handed 310
Helix 14
AB5
A
363 367Right-handed 310
Helix 15
AB6
A
368 379Right-handed alpha
Helix 16
AB7
A
392 406Right-handed alpha
Helix 17
AB8
A
472 476Right-handed 310
Helix 18
AB9
A
534 547Right-handed alpha
Helix 19
AC1
B
103 119Right-handed alpha
Helix 20
AC2
B
121 136Right-handed alpha
Helix 21
AC3
B
139 153Right-handed alpha
Helix 22
AC4
B
155 170Right-handed alpha
Helix 23
AC5
B
173 206Right-handed alpha
Helix 24
AC6
B
212 233Right-handed alpha
Helix 25
AC7
B
239 250Right-handed alpha
Helix 26
AC8
B
257 278Right-handed alpha
Helix 27
AC9
B
286 298Right-handed alpha
Helix 28
AD1
B
323 338Right-handed alpha
Helix 29
AD2
B
340 346Right-handed alpha
Helix 30
AD3
B
347 363Right-handed alpha
Helix 31
AD4
B
368 384Right-handed alpha
Helix 32
AD5
B
392 394Right-handed 310
Helix 33
AD6
B
395 408Right-handed alpha
Helix 34
AD7
B
411 431Right-handed alpha
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There are 8 sheets in PDB entry 6ZMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
62 63anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
31 35anti-parallel
Strand 4
A
167 172parallel
Strand 5
A
194 200parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
91 93anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
137 140anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 362first strand
Strand 2
A
217 225parallel
Strand 3
A
230 238anti-parallel
Strand 4
A
241 250anti-parallel
Strand 5
A
415 417parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 313first strand
Strand 2
A
316 323anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 437first strand
Strand 2
A
424 427anti-parallel
Strand 3
A
461 467anti-parallel
Strand 4
A
477 485anti-parallel
Strand 5
A
525 528anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 451first strand
Strand 2
A
497 503anti-parallel
Strand 3
A
509 515anti-parallel
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