Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZML entry

There are 6 chains in PDB entry 6ZML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 20	GLN 378
B	PRO 20	SER 387
C	ILE 19	LYS 380
D	ILE 19	ILE 369
E	PRO 26	PRO 386
F	LYS 21	VAL 388

There are 36 helices in PDB entry 6ZML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	45	Right-handed 310
Helix 2	AA2	A	134	138	Right-handed 310
Helix 3	AA3	A	206	211	Right-handed 310
Helix 4	AA4	A	323	329	Right-handed alpha
Helix 5	AA5	B	21	25	Right-handed 310
Helix 6	AA6	B	39	43	Right-handed 310
Helix 7	AA7	B	134	138	Right-handed 310
Helix 8	AA8	B	196	201	Right-handed alpha
Helix 9	AA9	B	206	211	Right-handed 310
Helix 10	AB1	B	222	226	Right-handed 310
Helix 11	AB2	B	277	279	Right-handed 310
Helix 12	AB3	B	323	329	Right-handed alpha
Helix 13	AB4	C	21	25	Right-handed 310
Helix 14	AB5	C	39	45	Right-handed 310
Helix 15	AB6	C	73	77	Right-handed 310
Helix 16	AB7	C	134	140	Right-handed 310
Helix 17	AB8	C	196	202	Right-handed alpha
Helix 18	AB9	C	206	211	Right-handed 310
Helix 19	AC1	C	323	330	Right-handed alpha
Helix 20	AC2	C	372	376	Right-handed 310
Helix 21	AC3	D	39	43	Right-handed 310
Helix 22	AC4	D	134	139	Right-handed 310
Helix 23	AC5	D	196	202	Right-handed alpha
Helix 24	AC6	D	206	211	Right-handed 310
Helix 25	AC7	D	277	279	Right-handed 310
Helix 26	AC8	D	323	335	Right-handed alpha
Helix 27	AC9	E	39	43	Right-handed 310
Helix 28	AD1	E	134	140	Right-handed 310
Helix 29	AD2	E	196	202	Right-handed alpha
Helix 30	AD3	E	207	211	Right-handed 310
Helix 31	AD4	E	277	281	Right-handed 310
Helix 32	AD5	E	323	333	Right-handed alpha
Helix 33	AD6	F	39	43	Right-handed 310
Helix 34	AD7	F	134	139	Right-handed 310
Helix 35	AD8	F	196	202	Right-handed alpha
Helix 36	AD9	F	206	211	Right-handed 310

There are 25 sheets in PDB entry 6ZML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	129	132	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	314	319	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	283	287	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	231	233	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	300	302	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	312	319	anti-parallel
Strand 3	B	119	129	anti-parallel
Strand 4	B	264	266	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	307	309	anti-parallel
Strand 3	B	130	132	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	281	289	anti-parallel
Strand 3	B	162	169	anti-parallel
Strand 4	B	241	248	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	174	177	anti-parallel
Strand 3	B	231	233	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	294	first strand
Strand 2	B	300	303	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	307	310	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	248	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	128	first strand
Strand 2	C	311	319	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	311	319	anti-parallel
Strand 3	D	119	127	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	248	first strand
Strand 2	D	162	168	anti-parallel
Strand 3	D	285	294	anti-parallel
Strand 4	D	300	303	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	231	233	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	307	309	anti-parallel
Strand 3	E	130	132	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	104	first strand
Strand 2	E	283	287	anti-parallel
Strand 3	E	162	169	anti-parallel
Strand 4	E	241	248	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	231	233	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	372	first strand
Strand 2	E	380	382	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	127	first strand
Strand 2	E	312	319	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	59	first strand
Strand 2	F	307	319	anti-parallel
Strand 3	F	119	128	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	107	first strand
Strand 2	F	281	287	anti-parallel
Strand 3	F	162	169	anti-parallel
Strand 4	F	242	248	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	371	373	first strand
Strand 2	F	379	381	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	294	first strand
Strand 2	F	300	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZML

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZML