Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZMS entry

There are 4 chains in PDB entry 6ZMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2THR 272
B
 SER 10GLN 261
C
 GLY 1GLN 238
D
 ALA 2ASN 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6ZMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 59Right-handed alpha
Helix 2
AA2
A
93 99Right-handed alpha
Helix 3
AA3
A
150 155Right-handed 310
Helix 4
AA4
A
200 204Right-handed 310
Helix 5
AA5
B
35 37Right-handed 310
Helix 6
AA6
B
142 146Right-handed 310
Helix 7
AA7
B
178 182Right-handed 310
Helix 8
AA8
C
65 69Right-handed 310
Helix 9
AA9
C
144 149Right-handed alpha
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There are 13 sheets in PDB entry 6ZMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
C
163 167anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
207 216anti-parallel
Strand 5
C
51 53anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
C
163 167anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
207 216anti-parallel
Strand 5
C
70 73anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 71first strand
Strand 2
A
223 231anti-parallel
Strand 3
A
108 118anti-parallel
Strand 4
A
171 174anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
C
39 40anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
209 214anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
197 201parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
197 201parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
69 71anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
219 230anti-parallel
Strand 3
B
119 128anti-parallel
Strand 4
B
187 191anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 105first strand
Strand 2
B
248 255anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 86first strand
Strand 2
C
189 194anti-parallel
Strand 3
C
129 135anti-parallel
Strand 4
C
152 157anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
221 225anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
25 28anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il