Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZNE entry

There are 6 chains in PDB entry 6ZNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 439	SER 776
B	SER 439	SER 776
D	SER 439	SER 776
F	SER 439	SER 776
E	SER 439	SER 776
C	SER 439	ARG 777

There are 90 helices in PDB entry 6ZNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	439	455	Right-handed alpha
Helix 2	AA2	A	471	484	Right-handed alpha
Helix 3	AA3	A	494	505	Right-handed alpha
Helix 4	AA4	A	507	511	Right-handed 310
Helix 5	AA5	A	517	521	Right-handed 310
Helix 6	AA6	A	523	536	Right-handed alpha
Helix 7	AA7	A	541	550	Right-handed alpha
Helix 8	AA8	A	551	562	Right-handed alpha
Helix 9	AA9	A	575	587	Right-handed alpha
Helix 10	AB1	A	620	638	Right-handed alpha
Helix 11	AB2	A	657	673	Right-handed alpha
Helix 12	AB3	A	683	689	Right-handed alpha
Helix 13	AB4	A	689	697	Right-handed alpha
Helix 14	AB5	A	713	728	Right-handed alpha
Helix 15	AB6	A	752	776	Right-handed alpha
Helix 16	AB7	B	440	456	Right-handed alpha
Helix 17	AB8	B	471	484	Right-handed alpha
Helix 18	AB9	B	494	505	Right-handed alpha
Helix 19	AC1	B	507	511	Right-handed 310
Helix 20	AC2	B	517	521	Right-handed 310
Helix 21	AC3	B	523	536	Right-handed alpha
Helix 22	AC4	B	541	551	Right-handed alpha
Helix 23	AC5	B	551	562	Right-handed alpha
Helix 24	AC6	B	575	587	Right-handed alpha
Helix 25	AC7	B	620	638	Right-handed alpha
Helix 26	AC8	B	657	673	Right-handed alpha
Helix 27	AC9	B	683	689	Right-handed alpha
Helix 28	AD1	B	689	697	Right-handed alpha
Helix 29	AD2	B	713	727	Right-handed alpha
Helix 30	AD3	B	752	776	Right-handed alpha
Helix 31	AD4	D	440	456	Right-handed alpha
Helix 32	AD5	D	471	484	Right-handed alpha
Helix 33	AD6	D	494	505	Right-handed alpha
Helix 34	AD7	D	507	511	Right-handed 310
Helix 35	AD8	D	517	521	Right-handed 310
Helix 36	AD9	D	523	536	Right-handed alpha
Helix 37	AE1	D	541	550	Right-handed alpha
Helix 38	AE2	D	551	562	Right-handed alpha
Helix 39	AE3	D	575	587	Right-handed alpha
Helix 40	AE4	D	620	638	Right-handed alpha
Helix 41	AE5	D	657	673	Right-handed alpha
Helix 42	AE6	D	683	689	Right-handed alpha
Helix 43	AE7	D	689	697	Right-handed alpha
Helix 44	AE8	D	713	728	Right-handed alpha
Helix 45	AE9	D	752	776	Right-handed alpha
Helix 46	AF1	F	440	457	Right-handed alpha
Helix 47	AF2	F	471	484	Right-handed alpha
Helix 48	AF3	F	494	505	Right-handed alpha
Helix 49	AF4	F	507	511	Right-handed 310
Helix 50	AF5	F	517	521	Right-handed 310
Helix 51	AF6	F	523	536	Right-handed alpha
Helix 52	AF7	F	541	550	Right-handed alpha
Helix 53	AF8	F	551	562	Right-handed alpha
Helix 54	AF9	F	575	587	Right-handed alpha
Helix 55	AG1	F	620	638	Right-handed alpha
Helix 56	AG2	F	657	673	Right-handed alpha
Helix 57	AG3	F	683	689	Right-handed alpha
Helix 58	AG4	F	689	697	Right-handed alpha
Helix 59	AG5	F	713	728	Right-handed alpha
Helix 60	AG6	F	752	776	Right-handed alpha
Helix 61	AG7	E	440	456	Right-handed alpha
Helix 62	AG8	E	471	484	Right-handed alpha
Helix 63	AG9	E	494	505	Right-handed alpha
Helix 64	AH1	E	507	511	Right-handed 310
Helix 65	AH2	E	517	521	Right-handed 310
Helix 66	AH3	E	523	536	Right-handed alpha
Helix 67	AH4	E	541	550	Right-handed alpha
Helix 68	AH5	E	551	562	Right-handed alpha
Helix 69	AH6	E	575	587	Right-handed alpha
Helix 70	AH7	E	620	638	Right-handed alpha
Helix 71	AH8	E	657	673	Right-handed alpha
Helix 72	AH9	E	683	689	Right-handed alpha
Helix 73	AI1	E	689	697	Right-handed alpha
Helix 74	AI2	E	713	728	Right-handed alpha
Helix 75	AI3	E	752	776	Right-handed alpha
Helix 76	AI4	C	440	456	Right-handed alpha
Helix 77	AI5	C	471	483	Right-handed alpha
Helix 78	AI6	C	494	506	Right-handed alpha
Helix 79	AI7	C	507	511	Right-handed 310
Helix 80	AI8	C	517	521	Right-handed 310
Helix 81	AI9	C	523	536	Right-handed alpha
Helix 82	AJ1	C	541	551	Right-handed alpha
Helix 83	AJ2	C	551	562	Right-handed alpha
Helix 84	AJ3	C	575	587	Right-handed alpha
Helix 85	AJ4	C	620	638	Right-handed alpha
Helix 86	AJ5	C	657	673	Right-handed alpha
Helix 87	AJ6	C	683	689	Right-handed alpha
Helix 88	AJ7	C	689	697	Right-handed alpha
Helix 89	AJ8	C	713	728	Right-handed alpha
Helix 90	AJ9	C	752	777	Right-handed alpha

There are 12 sheets in PDB entry 6ZNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	516	first strand
Strand 2	A	488	492	parallel
Strand 3	A	463	466	parallel
Strand 4	A	567	570	parallel
Strand 5	A	743	746	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	682	first strand
Strand 2	A	643	647	parallel
Strand 3	A	708	710	parallel
Strand 4	A	607	611	parallel
Strand 5	A	596	602	anti-parallel
Strand 6	A	731	738	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	516	first strand
Strand 2	B	488	492	parallel
Strand 3	B	463	466	parallel
Strand 4	B	567	570	parallel
Strand 5	B	743	746	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	682	first strand
Strand 2	B	643	647	parallel
Strand 3	B	708	710	parallel
Strand 4	B	607	611	parallel
Strand 5	B	596	602	anti-parallel
Strand 6	B	731	738	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	516	first strand
Strand 2	D	488	492	parallel
Strand 3	D	463	466	parallel
Strand 4	D	567	570	parallel
Strand 5	D	743	746	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	677	682	first strand
Strand 2	D	643	647	parallel
Strand 3	D	708	710	parallel
Strand 4	D	607	611	parallel
Strand 5	D	596	602	anti-parallel
Strand 6	D	731	738	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	514	516	first strand
Strand 2	F	488	492	parallel
Strand 3	F	463	466	parallel
Strand 4	F	567	570	parallel
Strand 5	F	743	746	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	677	682	first strand
Strand 2	F	643	647	parallel
Strand 3	F	708	710	parallel
Strand 4	F	607	611	parallel
Strand 5	F	596	602	anti-parallel
Strand 6	F	731	738	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	514	516	first strand
Strand 2	E	488	492	parallel
Strand 3	E	463	466	parallel
Strand 4	E	567	570	parallel
Strand 5	E	743	746	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	677	682	first strand
Strand 2	E	643	647	parallel
Strand 3	E	708	710	parallel
Strand 4	E	607	611	parallel
Strand 5	E	596	602	anti-parallel
Strand 6	E	731	738	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	516	first strand
Strand 2	C	488	492	parallel
Strand 3	C	463	466	parallel
Strand 4	C	567	570	parallel
Strand 5	C	743	746	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	677	682	first strand
Strand 2	C	643	647	parallel
Strand 3	C	708	710	parallel
Strand 4	C	607	611	parallel
Strand 5	C	596	602	anti-parallel
Strand 6	C	731	738	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZNE