Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZNP entry

There are 4 chains in PDB entry 6ZNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	SER 749
B	LYS 3	SER 749
C	T -6	C 7
D	T -6	C 7

There are 59 helices in PDB entry 6ZNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	15	Right-handed alpha
Helix 2	AA2	A	40	49	Right-handed alpha
Helix 3	AA3	A	50	52	Right-handed 310
Helix 4	AA4	A	57	69	Right-handed alpha
Helix 5	AA5	A	77	80	Right-handed 310
Helix 6	AA6	A	81	97	Right-handed alpha
Helix 7	AA7	A	108	126	Right-handed alpha
Helix 8	AA8	A	140	151	Right-handed alpha
Helix 9	AA9	A	157	164	Right-handed alpha
Helix 10	AB1	A	165	171	Right-handed 310
Helix 11	AB2	A	172	177	Right-handed alpha
Helix 12	AB3	A	186	190	Right-handed 310
Helix 13	AB4	A	191	212	Right-handed alpha
Helix 14	AB5	A	227	237	Right-handed alpha
Helix 15	AB6	A	272	287	Right-handed alpha
Helix 16	AB7	A	297	313	Right-handed alpha
Helix 17	AB8	A	329	343	Right-handed alpha
Helix 18	AB9	A	352	356	Right-handed 310
Helix 19	AC1	A	374	383	Right-handed alpha
Helix 20	AC2	A	401	410	Right-handed alpha
Helix 21	AC3	A	410	417	Right-handed alpha
Helix 22	AC4	A	428	443	Right-handed alpha
Helix 23	AC5	A	456	466	Right-handed alpha
Helix 24	AC6	A	484	488	Right-handed 310
Helix 25	AC7	A	505	509	Right-handed 310
Helix 26	AC8	A	517	524	Right-handed alpha
Helix 27	AC9	A	638	661	Right-handed alpha
Helix 28	AD1	A	695	703	Right-handed alpha
Helix 29	AD2	A	703	718	Right-handed alpha
Helix 30	AD3	A	736	748	Right-handed alpha
Helix 31	AD4	B	5	15	Right-handed alpha
Helix 32	AD5	B	40	49	Right-handed alpha
Helix 33	AD6	B	50	52	Right-handed 310
Helix 34	AD7	B	57	68	Right-handed alpha
Helix 35	AD8	B	77	80	Right-handed 310
Helix 36	AD9	B	81	97	Right-handed alpha
Helix 37	AE1	B	108	126	Right-handed alpha
Helix 38	AE2	B	140	151	Right-handed alpha
Helix 39	AE3	B	157	164	Right-handed alpha
Helix 40	AE4	B	165	171	Right-handed 310
Helix 41	AE5	B	172	177	Right-handed alpha
Helix 42	AE6	B	186	190	Right-handed 310
Helix 43	AE7	B	191	212	Right-handed alpha
Helix 44	AE8	B	227	237	Right-handed alpha
Helix 45	AE9	B	272	286	Right-handed alpha
Helix 46	AF1	B	297	313	Right-handed alpha
Helix 47	AF2	B	329	343	Right-handed alpha
Helix 48	AF3	B	352	356	Right-handed 310
Helix 49	AF4	B	374	384	Right-handed alpha
Helix 50	AF5	B	401	410	Right-handed alpha
Helix 51	AF6	B	410	417	Right-handed alpha
Helix 52	AF7	B	428	443	Right-handed alpha
Helix 53	AF8	B	456	466	Right-handed alpha
Helix 54	AF9	B	484	488	Right-handed 310
Helix 55	AG1	B	517	524	Right-handed alpha
Helix 56	AG2	B	646	662	Right-handed alpha
Helix 57	AG3	B	695	703	Right-handed alpha
Helix 58	AG4	B	703	718	Right-handed alpha
Helix 59	AG5	B	737	748	Right-handed alpha

There are 16 sheets in PDB entry 6ZNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	25	first strand
Strand 2	A	253	258	anti-parallel
Strand 3	A	392	397	parallel
Strand 4	A	365	369	parallel
Strand 5	A	291	294	parallel
Strand 6	A	347	350	parallel
Strand 7	A	321	324	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	54	56	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	153	156	parallel
Strand 3	A	101	105	parallel
Strand 4	A	179	184	parallel
Strand 5	A	217	221	parallel
Strand 6	A	72	74	parallel
Strand 7	A	241	243	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	269	270	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	475	478	anti-parallel
Strand 3	A	469	472	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	516	first strand
Strand 2	A	497	502	anti-parallel
Strand 3	A	548	553	parallel
Strand 4	A	535	543	anti-parallel
Strand 5	A	529	532	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	562	first strand
Strand 2	A	597	602	anti-parallel
Strand 3	A	608	613	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	579	first strand
Strand 2	A	582	594	anti-parallel
Strand 3	A	619	630	anti-parallel
Strand 4	A	683	688	anti-parallel
Strand 5	A	668	673	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	25	first strand
Strand 2	B	253	258	anti-parallel
Strand 3	B	392	397	parallel
Strand 4	B	365	369	parallel
Strand 5	B	291	294	parallel
Strand 6	B	347	350	parallel
Strand 7	B	321	324	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	54	56	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	153	156	parallel
Strand 3	B	101	105	parallel
Strand 4	B	179	184	parallel
Strand 5	B	217	221	parallel
Strand 6	B	71	74	parallel
Strand 7	B	240	243	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	475	478	anti-parallel
Strand 3	B	469	472	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	516	first strand
Strand 2	B	497	502	anti-parallel
Strand 3	B	548	553	parallel
Strand 4	B	535	543	anti-parallel
Strand 5	B	529	532	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	562	first strand
Strand 2	B	597	602	anti-parallel
Strand 3	B	608	613	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	569	first strand
Strand 2	B	590	594	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	587	first strand
Strand 2	B	625	628	anti-parallel
Strand 3	B	684	688	anti-parallel
Strand 4	B	668	672	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZNP