Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZOT entry

There are 4 chains in PDB entry 6ZOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 392GLU 571
A
 ASN 403ASP 562
C
 G 2 G 2
C
 C 4 U 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6ZOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
392 402Right-handed alpha
Helix 2
AA2
B
425 436Right-handed alpha
Helix 3
AA3
B
441 456Right-handed alpha
Helix 4
AA4
B
514 516Right-handed 310
Helix 5
AA5
B
528 532Right-handed 310
Helix 6
AA6
B
539 553Right-handed alpha
Helix 7
AA7
B
558 561Right-handed 310
Helix 8
AA8
B
562 569Right-handed alpha
Helix 9
AA9
A
412 416Right-handed 310
Helix 10
AB1
A
425 436Right-handed alpha
Helix 11
AB2
A
441 456Right-handed alpha
Helix 12
AB3
A
514 516Right-handed 310
Helix 13
AB4
A
528 532Right-handed 310
Helix 14
AB5
A
539 553Right-handed alpha
Helix 15
AB6
A
558 562Right-handed 310
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There are 2 sheets in PDB entry 6ZOT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 438first strand
Strand 2
B
501 512anti-parallel
Strand 3
B
472 479anti-parallel
Strand 4
B
461 467anti-parallel
Strand 5
B
417 423parallel
Strand 6
B
537 538anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
501 512anti-parallel
Strand 3
A
472 479anti-parallel
Strand 4
A
461 467anti-parallel
Strand 5
A
417 423parallel
Strand 6
A
536 538anti-parallel
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