Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZP9 entry

There are 2 chains in PDB entry 6ZP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6PRO 190
B
 PRO 6PRO 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6ZP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
48 59Right-handed alpha
Helix 5
AA5
A
72 76Right-handed 310
Helix 6
AA6
A
90 97Right-handed alpha
Helix 7
AA7
A
128 144Right-handed alpha
Helix 8
AA8
A
181 189Right-handed alpha
Helix 9
AA9
B
9 20Right-handed alpha
Helix 10
AB1
B
23 26Right-handed 310
Helix 11
AB2
B
35 39Right-handed 310
Helix 12
AB3
B
48 59Right-handed alpha
Helix 13
AB4
B
72 76Right-handed 310
Helix 14
AB5
B
90 101Right-handed alpha
Helix 15
AB6
B
129 144Right-handed alpha
Helix 16
AB7
B
181 189Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6ZP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
117 127anti-parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
171 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 84first strand
Strand 2
B
117 128anti-parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
171 173anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il