Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZPI entry

There are 3 chains in PDB entry 6ZPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 24THR 373
A
 MET 1VAL 437
B
 MET 1GLN 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6ZPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
81 99Right-handed alpha
Helix 2
AA2
C
114 120Right-handed alpha
Helix 3
AA3
C
129 133Right-handed alpha
Helix 4
AA4
C
134 152Right-handed alpha
Helix 5
AA5
C
207 222Right-handed alpha
Helix 6
AA6
C
271 276Right-handed alpha
Helix 7
AA7
C
279 307Right-handed alpha
Helix 8
AA8
C
314 317Right-handed 310
Helix 9
AA9
C
318 324Right-handed alpha
Helix 10
AB1
C
343 345Right-handed 310
Helix 11
AB2
C
346 363Right-handed alpha
Helix 12
AB3
A
10 29Right-handed alpha
Helix 13
AB4
A
71 81Right-handed alpha
Helix 14
AB5
A
102 107Right-handed alpha
Helix 15
AB6
A
110 127Right-handed alpha
Helix 16
AB7
A
143 161Right-handed alpha
Helix 17
AB8
A
182 195Right-handed alpha
Helix 18
AB9
A
205 216Right-handed alpha
Helix 19
AC1
A
223 244Right-handed alpha
Helix 20
AC2
A
251 259Right-handed alpha
Helix 21
AC3
A
287 296Right-handed alpha
Helix 22
AC4
A
324 338Right-handed alpha
Helix 23
AC5
A
384 402Right-handed alpha
Helix 24
AC6
A
405 410Right-handed alpha
Helix 25
AC7
A
414 437Right-handed alpha
Helix 26
AC8
B
10 28Right-handed alpha
Helix 27
AC9
B
41 48Right-handed alpha
Helix 28
AD1
B
49 51Right-handed 310
Helix 29
AD2
B
72 81Right-handed alpha
Helix 30
AD3
B
82 87Right-handed 310
Helix 31
AD4
B
88 90Right-handed 310
Helix 32
AD5
B
102 108Right-handed alpha
Helix 33
AD6
B
109 128Right-handed alpha
Helix 34
AD7
B
144 161Right-handed alpha
Helix 35
AD8
B
182 198Right-handed alpha
Helix 36
AD9
B
206 216Right-handed alpha
Helix 37
AE1
B
223 244Right-handed alpha
Helix 38
AE2
B
251 260Right-handed alpha
Helix 39
AE3
B
287 296Right-handed alpha
Helix 40
AE4
B
297 301Right-handed 310
Helix 41
AE5
B
324 339Right-handed alpha
Helix 42
AE6
B
340 343Right-handed 310
Helix 43
AE7
B
384 401Right-handed alpha
Helix 44
AE8
B
405 410Right-handed alpha
Helix 45
AE9
B
414 435Right-handed alpha
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There are 10 sheets in PDB entry 6ZPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 26first strand
Strand 2
C
364 365anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 76first strand
Strand 2
C
28 33parallel
Strand 3
C
333 340parallel
Strand 4
C
103 109parallel
Strand 5
C
255 265parallel
Strand 6
C
237 248anti-parallel
Strand 7
C
158 170anti-parallel
Strand 8
C
203 204anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 176first strand
Strand 2
C
158 170anti-parallel
Strand 3
C
237 248anti-parallel
Strand 4
C
255 265anti-parallel
Strand 5
C
371 372anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
58 61anti-parallel
Strand 3
C
68 71anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 188first strand
Strand 2
C
196 198anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
2 9parallel
Strand 4
A
131 138parallel
Strand 5
A
167 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il