Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZPL entry

There are 2 chains in PDB entry 6ZPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 107GLY 664
A
 ASN 105PHE 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 6ZPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
107 117Right-handed alpha
Helix 2
AA2
B
119 124Right-handed alpha
Helix 3
AA3
B
124 133Right-handed alpha
Helix 4
AA4
B
134 149Right-handed alpha
Helix 5
AA5
B
149 165Right-handed alpha
Helix 6
AA6
B
169 178Right-handed 310
Helix 7
AA7
B
179 210Right-handed alpha
Helix 8
AA8
B
215 219Right-handed 310
Helix 9
AA9
B
263 272Right-handed alpha
Helix 10
AB1
B
287 308Right-handed alpha
Helix 11
AB2
B
316 336Right-handed alpha
Helix 12
AB3
B
339 349Right-handed alpha
Helix 13
AB4
B
357 373Right-handed alpha
Helix 14
AB5
B
377 386Right-handed alpha
Helix 15
AB6
B
391 426Right-handed alpha
Helix 16
AB7
B
428 432Right-handed 310
Helix 17
AB8
B
436 440Right-handed 310
Helix 18
AB9
B
443 450Right-handed alpha
Helix 19
AC1
B
453 487Right-handed alpha
Helix 20
AC2
B
493 495Right-handed 310
Helix 21
AC3
B
496 512Right-handed alpha
Helix 22
AC4
B
513 517Right-handed 310
Helix 23
AC5
B
519 530Right-handed alpha
Helix 24
AC6
B
534 549Right-handed alpha
Helix 25
AC7
B
552 565Right-handed alpha
Helix 26
AC8
B
569 578Right-handed alpha
Helix 27
AC9
B
578 594Right-handed alpha
Helix 28
AD1
B
606 620Right-handed alpha
Helix 29
AD2
B
622 635Right-handed alpha
Helix 30
AD3
B
641 649Right-handed alpha
Helix 31
AD4
A
107 117Right-handed alpha
Helix 32
AD5
A
119 124Right-handed alpha
Helix 33
AD6
A
124 133Right-handed alpha
Helix 34
AD7
A
134 149Right-handed alpha
Helix 35
AD8
A
149 165Right-handed alpha
Helix 36
AD9
A
169 178Right-handed 310
Helix 37
AE1
A
179 210Right-handed alpha
Helix 38
AE2
A
215 219Right-handed 310
Helix 39
AE3
A
263 272Right-handed alpha
Helix 40
AE4
A
287 308Right-handed alpha
Helix 41
AE5
A
316 336Right-handed alpha
Helix 42
AE6
A
339 349Right-handed alpha
Helix 43
AE7
A
357 373Right-handed alpha
Helix 44
AE8
A
377 386Right-handed alpha
Helix 45
AE9
A
391 426Right-handed alpha
Helix 46
AF1
A
438 450Right-handed alpha
Helix 47
AF2
A
453 489Right-handed alpha
Helix 48
AF3
A
489 512Right-handed alpha
Helix 49
AF4
A
513 517Right-handed 310
Helix 50
AF5
A
519 529Right-handed alpha
Helix 51
AF6
A
534 549Right-handed alpha
Helix 52
AF7
A
552 565Right-handed alpha
Helix 53
AF8
A
569 578Right-handed alpha
Helix 54
AF9
A
578 594Right-handed alpha
Helix 55
AG1
A
606 622Right-handed alpha
Helix 56
AG2
A
622 635Right-handed alpha
Helix 57
AG3
A
641 649Right-handed alpha
Helix 58
AG4
C
20 32Right-handed alpha
Helix 59
AG5
C
47 62Right-handed alpha
Helix 60
AG6
C
75 82Right-handed alpha
Helix 61
AG7
C
84 99Right-handed alpha
Helix 62
AG8
C
129 146Right-handed alpha
Helix 63
AG9
C
200 212Right-handed alpha
Helix 64
AH1
C
231 245Right-handed alpha
Helix 65
AH2
C
269 280Right-handed alpha
Helix 66
AH3
E
28 32Right-handed 310
Helix 67
AH4
E
87 91Right-handed 310
Helix 68
AH5
F
28 32Right-handed 310
Helix 69
AH6
F
87 91Right-handed 310
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There are 9 sheets in PDB entry 6ZPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
599 600first strand
Strand 2
B
603 604anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 600first strand
Strand 2
A
603 604anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 105first strand
Strand 2
C
64 70parallel
Strand 3
C
37 43parallel
Strand 4
C
10 13parallel
Strand 5
C
250 255parallel
Strand 6
C
218 222parallel
Strand 7
C
179 183parallel
Strand 8
C
153 157parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
115 120parallel
Strand 3
E
92 100anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
115 120parallel
Strand 3
E
92 100anti-parallel
Strand 4
E
108 111anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
18 25anti-parallel
Strand 3
F
78 83anti-parallel
Strand 4
F
69 73anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
115 120parallel
Strand 3
F
92 100anti-parallel
Strand 4
F
34 39anti-parallel
Strand 5
F
45 51anti-parallel
Strand 6
F
58 60anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
115 120parallel
Strand 3
F
92 100anti-parallel
Strand 4
F
108 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il