Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZPT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZPT entry

There are 4 chains in PDB entry 6ZPT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 6	GLU 609
B	GLN 6	GLU 609
C	GLN 6	GLU 609
D	GLY 4	PRO 608

There are119 helices in PDB entry 6ZPT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	44	Right-handed alpha
Helix 2	AA2	A	47	76	Right-handed alpha
Helix 3	AA3	A	85	96	Right-handed alpha
Helix 4	AA4	A	98	102	Right-handed 310
Helix 5	AA5	A	104	124	Right-handed alpha
Helix 6	AA6	A	141	150	Right-handed alpha
Helix 7	AA7	A	152	188	Right-handed alpha
Helix 8	AA8	A	193	200	Right-handed alpha
Helix 9	AA9	A	201	203	Right-handed 310
Helix 10	AB1	A	206	238	Right-handed alpha
Helix 11	AB2	A	261	263	Right-handed 310
Helix 12	AB3	A	264	269	Right-handed alpha
Helix 13	AB4	A	279	286	Right-handed alpha
Helix 14	AB5	A	289	304	Right-handed alpha
Helix 15	AB6	A	310	317	Right-handed alpha
Helix 16	AB7	A	352	372	Right-handed alpha
Helix 17	AB8	A	376	380	Right-handed 310
Helix 18	AB9	A	387	400	Right-handed alpha
Helix 19	AC1	A	401	408	Right-handed alpha
Helix 20	AC2	A	417	433	Right-handed alpha
Helix 21	AC3	A	435	452	Right-handed alpha
Helix 22	AC4	A	455	457	Right-handed 310
Helix 23	AC5	A	458	471	Right-handed alpha
Helix 24	AC6	A	484	489	Right-handed 310
Helix 25	AC7	A	498	519	Right-handed alpha
Helix 26	AC8	A	524	528	Right-handed 310
Helix 27	AC9	A	533	547	Right-handed alpha
Helix 28	AD1	A	551	561	Right-handed alpha
Helix 29	AD2	A	567	574	Right-handed alpha
Helix 30	AD3	A	574	588	Right-handed alpha
Helix 31	AD4	B	13	44	Right-handed alpha
Helix 32	AD5	B	47	77	Right-handed alpha
Helix 33	AD6	B	79	83	Right-handed 310
Helix 34	AD7	B	85	96	Right-handed alpha
Helix 35	AD8	B	98	103	Right-handed 310
Helix 36	AD9	B	104	125	Right-handed alpha
Helix 37	AE1	B	141	150	Right-handed alpha
Helix 38	AE2	B	152	169	Right-handed alpha
Helix 39	AE3	B	171	188	Right-handed alpha
Helix 40	AE4	B	193	201	Right-handed alpha
Helix 41	AE5	B	206	238	Right-handed alpha
Helix 42	AE6	B	261	263	Right-handed 310
Helix 43	AE7	B	264	269	Right-handed alpha
Helix 44	AE8	B	279	286	Right-handed alpha
Helix 45	AE9	B	289	303	Right-handed alpha
Helix 46	AF1	B	310	317	Right-handed alpha
Helix 47	AF2	B	352	373	Right-handed alpha
Helix 48	AF3	B	376	380	Right-handed 310
Helix 49	AF4	B	386	400	Right-handed alpha
Helix 50	AF5	B	401	408	Right-handed alpha
Helix 51	AF6	B	417	451	Right-handed alpha
Helix 52	AF7	B	455	457	Right-handed 310
Helix 53	AF8	B	458	471	Right-handed alpha
Helix 54	AF9	B	484	489	Right-handed 310
Helix 55	AG1	B	498	519	Right-handed alpha
Helix 56	AG2	B	524	528	Right-handed 310
Helix 57	AG3	B	533	545	Right-handed alpha
Helix 58	AG4	B	551	561	Right-handed alpha
Helix 59	AG5	B	567	574	Right-handed alpha
Helix 60	AG6	B	574	588	Right-handed alpha
Helix 61	AG7	C	13	45	Right-handed alpha
Helix 62	AG8	C	47	75	Right-handed alpha
Helix 63	AG9	C	85	96	Right-handed alpha
Helix 64	AH1	C	98	103	Right-handed 310
Helix 65	AH2	C	104	124	Right-handed alpha
Helix 66	AH3	C	141	150	Right-handed alpha
Helix 67	AH4	C	152	169	Right-handed alpha
Helix 68	AH5	C	171	190	Right-handed alpha
Helix 69	AH6	C	193	200	Right-handed alpha
Helix 70	AH7	C	201	203	Right-handed 310
Helix 71	AH8	C	206	238	Right-handed alpha
Helix 72	AH9	C	261	268	Right-handed 310
Helix 73	AI1	C	279	286	Right-handed alpha
Helix 74	AI2	C	289	303	Right-handed alpha
Helix 75	AI3	C	310	317	Right-handed alpha
Helix 76	AI4	C	352	373	Right-handed alpha
Helix 77	AI5	C	376	380	Right-handed 310
Helix 78	AI6	C	386	400	Right-handed alpha
Helix 79	AI7	C	401	408	Right-handed alpha
Helix 80	AI8	C	417	433	Right-handed alpha
Helix 81	AI9	C	434	452	Right-handed alpha
Helix 82	AJ1	C	455	457	Right-handed 310
Helix 83	AJ2	C	458	471	Right-handed alpha
Helix 84	AJ3	C	484	489	Right-handed 310
Helix 85	AJ4	C	498	519	Right-handed alpha
Helix 86	AJ5	C	524	528	Right-handed 310
Helix 87	AJ6	C	533	547	Right-handed alpha
Helix 88	AJ7	C	551	561	Right-handed alpha
Helix 89	AJ8	C	567	574	Right-handed alpha
Helix 90	AJ9	C	574	588	Right-handed alpha
Helix 91	AK1	D	13	44	Right-handed alpha
Helix 92	AK2	D	47	76	Right-handed alpha
Helix 93	AK3	D	79	83	Right-handed 310
Helix 94	AK4	D	85	96	Right-handed alpha
Helix 95	AK5	D	98	103	Right-handed 310
Helix 96	AK6	D	104	125	Right-handed alpha
Helix 97	AK7	D	141	150	Right-handed alpha
Helix 98	AK8	D	152	189	Right-handed alpha
Helix 99	AK9	D	193	200	Right-handed alpha
Helix 100	AL1	D	201	203	Right-handed 310
Helix 101	AL2	D	206	242	Right-handed alpha
Helix 102	AL3	D	260	265	Right-handed 310
Helix 103	AL4	D	279	286	Right-handed alpha
Helix 104	AL5	D	289	304	Right-handed alpha
Helix 105	AL6	D	310	317	Right-handed alpha
Helix 106	AL7	D	352	372	Right-handed alpha
Helix 107	AL8	D	376	380	Right-handed 310
Helix 108	AL9	D	386	400	Right-handed alpha
Helix 109	AM1	D	401	408	Right-handed alpha
Helix 110	AM2	D	417	433	Right-handed alpha
Helix 111	AM3	D	434	452	Right-handed alpha
Helix 112	AM4	D	455	457	Right-handed 310
Helix 113	AM5	D	458	470	Right-handed alpha
Helix 114	AM6	D	485	489	Right-handed 310
Helix 115	AM7	D	498	519	Right-handed alpha
Helix 116	AM8	D	533	545	Right-handed alpha
Helix 117	AM9	D	551	561	Right-handed alpha
Helix 118	AN1	D	567	574	Right-handed alpha
Helix 119	AN2	D	574	588	Right-handed alpha

There are 12 sheets in PDB entry 6ZPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	136	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	473	474	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	343	346	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	128	first strand
Strand 2	B	136	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	473	474	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	343	346	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	136	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	473	474	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	343	346	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	128	first strand
Strand 2	D	136	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	473	474	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	336	first strand
Strand 2	D	343	346	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZPT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZPT