Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZQ8 entry

There are 2 chains in PDB entry 6ZQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 65	GLU 583
A	PHE 67	ILE 210

There are 41 helices in PDB entry 6ZQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	110	132	Right-handed alpha
Helix 2	AA2	B	135	137	Right-handed 310
Helix 3	AA3	B	173	183	Right-handed alpha
Helix 4	AA4	B	184	187	Right-handed 310
Helix 5	AA5	B	188	194	Right-handed alpha
Helix 6	AA6	B	201	213	Right-handed alpha
Helix 7	AA7	B	213	222	Right-handed alpha
Helix 8	AA8	B	230	239	Right-handed alpha
Helix 9	AA9	B	253	257	Right-handed alpha
Helix 10	AB1	B	270	278	Right-handed alpha
Helix 11	AB2	B	303	307	Right-handed 310
Helix 12	AB3	B	317	325	Right-handed alpha
Helix 13	AB4	B	383	393	Right-handed alpha
Helix 14	AB5	B	399	409	Right-handed alpha
Helix 15	AB6	B	446	474	Right-handed alpha
Helix 16	AB7	B	484	488	Right-handed 310
Helix 17	AB8	B	489	501	Right-handed alpha
Helix 18	AB9	B	511	524	Right-handed alpha
Helix 19	AC1	B	531	539	Right-handed alpha
Helix 20	AC2	B	559	578	Right-handed alpha
Helix 21	AC3	A	110	130	Right-handed alpha
Helix 22	AC4	A	131	133	Right-handed 310
Helix 23	AC5	A	135	139	Right-handed 310
Helix 24	AC6	A	173	181	Right-handed alpha
Helix 25	AC7	A	182	187	Right-handed 310
Helix 26	AC8	A	189	194	Right-handed alpha
Helix 27	AC9	A	201	213	Right-handed alpha
Helix 28	AD1	A	216	223	Right-handed alpha
Helix 29	AD2	A	229	238	Right-handed alpha
Helix 30	AD3	A	253	257	Right-handed alpha
Helix 31	AD4	A	270	278	Right-handed alpha
Helix 32	AD5	A	317	325	Right-handed alpha
Helix 33	AD6	A	384	393	Right-handed alpha
Helix 34	AD7	A	400	408	Right-handed alpha
Helix 35	AD8	A	446	474	Right-handed alpha
Helix 36	AD9	A	484	488	Right-handed 310
Helix 37	AE1	A	489	501	Right-handed alpha
Helix 38	AE2	A	511	525	Right-handed alpha
Helix 39	AE3	A	530	535	Right-handed alpha
Helix 40	AE4	A	536	541	Right-handed 310
Helix 41	AE5	A	559	578	Right-handed alpha

There are 13 sheets in PDB entry 6ZQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	96	first strand
Strand 2	B	77	83	anti-parallel
Strand 3	B	67	73	anti-parallel
Strand 4	B	139	146	parallel
Strand 5	B	311	316	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	165	166	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	225	229	anti-parallel
Strand 3	B	284	285	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	288	290	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	268	269	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	364	first strand
Strand 2	B	373	380	anti-parallel
Strand 3	B	341	348	anti-parallel
Strand 4	B	332	337	anti-parallel
Strand 5	B	479	483	parallel
Strand 6	B	504	505	parallel
Strand 7	B	553	554	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	419	first strand
Strand 2	B	437	439	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	141	146	parallel
Strand 4	A	315	316	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	225	228	anti-parallel
Strand 3	A	284	285	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	252	first strand
Strand 2	A	288	290	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	268	269	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	364	first strand
Strand 2	A	373	380	anti-parallel
Strand 3	A	341	348	anti-parallel
Strand 4	A	332	337	anti-parallel
Strand 5	A	479	483	parallel
Strand 6	A	504	505	parallel
Strand 7	A	553	554	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	419	first strand
Strand 2	A	437	439	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQ8