Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZQM entry

There are 37 chains in PDB entry 6ZQM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 23	PHE 508
B	SER 9	PHE 508
C	LYS 2	GLU 509
D	THR 9	HIS 477
E	THR 9	GLU 475
F	THR 9	GLU 475
G	ALA 1	LEU 272
H	GLN 15	GLU 146
I	VAL 1	VAL 47
J	VAL 8	SER 54
K	ASP 1	LEU 42
K	GLN 44	ALA 74
L	ASP 1	LEU 42
L	GLN 44	MET 75
M	ASP 1	LEU 42
M	GLN 44	ALA 74
N	ASP 1	LEU 42
N	GLN 44	ALA 74
O	ASP 1	LEU 42
O	GLN 44	ALA 74
P	ASP 1	LEU 42
P	GLN 44	ALA 74
Q	ASP 1	LEU 42
Q	GLN 44	ALA 74
R	ASP 1	LEU 42
R	GLN 44	ALA 74
S	PHE 1	GLU 188
8	MET 1	GLU 38
a	MET 1	THR 226
d	LEU 5	GLU 158
f	PRO 5	HIS 87
g	THR 20	ILE 98
j	LEU 2	LYS 49
b	PRO 1	GLN 209
h	ASP 5	PRO 66
k	THR 12	ARG 47
e	PRO 2	GLU 57

There are217 helices in PDB entry 6ZQM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	82	Right-handed 310
Helix 2	AA2	A	150	157	Right-handed alpha
Helix 3	AA3	A	174	186	Right-handed alpha
Helix 4	AA4	A	186	191	Right-handed alpha
Helix 5	AA5	A	209	223	Right-handed alpha
Helix 6	AA6	A	239	259	Right-handed alpha
Helix 7	AA7	A	271	286	Right-handed alpha
Helix 8	AA8	A	290	294	Right-handed 310
Helix 9	AA9	A	299	307	Right-handed alpha
Helix 10	AB1	A	313	317	Right-handed 310
Helix 11	AB2	A	330	333	Right-handed 310
Helix 12	AB3	A	336	344	Right-handed alpha
Helix 13	AB4	A	353	359	Right-handed alpha
Helix 14	AB5	A	374	379	Right-handed 310
Helix 15	AB6	A	380	399	Right-handed alpha
Helix 16	AB7	A	400	406	Right-handed 310
Helix 17	AB8	A	411	428	Right-handed alpha
Helix 18	AB9	A	437	451	Right-handed alpha
Helix 19	AC1	A	457	459	Right-handed 310
Helix 20	AC2	A	460	475	Right-handed alpha
Helix 21	AC3	A	476	487	Right-handed alpha
Helix 22	AC4	A	490	507	Right-handed alpha
Helix 23	AC5	B	10	17	Right-handed alpha
Helix 24	AC6	B	78	82	Right-handed 310
Helix 25	AC7	B	100	104	Right-handed 310
Helix 26	AC8	B	150	156	Right-handed alpha
Helix 27	AC9	B	174	186	Right-handed alpha
Helix 28	AD1	B	187	192	Right-handed 310
Helix 29	AD2	B	209	223	Right-handed alpha
Helix 30	AD3	B	239	244	Right-handed alpha
Helix 31	AD4	B	245	260	Right-handed alpha
Helix 32	AD5	B	274	285	Right-handed alpha
Helix 33	AD6	B	290	294	Right-handed 310
Helix 34	AD7	B	295	298	Right-handed 310
Helix 35	AD8	B	299	307	Right-handed alpha
Helix 36	AD9	B	313	317	Right-handed 310
Helix 37	AE1	B	330	333	Right-handed 310
Helix 38	AE2	B	336	344	Right-handed alpha
Helix 39	AE3	B	353	359	Right-handed alpha
Helix 40	AE4	B	380	401	Right-handed alpha
Helix 41	AE5	B	411	429	Right-handed alpha
Helix 42	AE6	B	437	450	Right-handed alpha
Helix 43	AE7	B	457	459	Right-handed 310
Helix 44	AE8	B	460	476	Right-handed alpha
Helix 45	AE9	B	476	486	Right-handed alpha
Helix 46	AF1	B	490	507	Right-handed alpha
Helix 47	AF2	C	8	17	Right-handed alpha
Helix 48	AF3	C	19	23	Right-handed 310
Helix 49	AF4	C	78	82	Right-handed 310
Helix 50	AF5	C	150	157	Right-handed alpha
Helix 51	AF6	C	174	186	Right-handed alpha
Helix 52	AF7	C	186	191	Right-handed alpha
Helix 53	AF8	C	209	223	Right-handed alpha
Helix 54	AF9	C	239	260	Right-handed alpha
Helix 55	AG1	C	270	285	Right-handed alpha
Helix 56	AG2	C	290	294	Right-handed 310
Helix 57	AG3	C	297	307	Right-handed alpha
Helix 58	AG4	C	313	317	Right-handed 310
Helix 59	AG5	C	336	344	Right-handed alpha
Helix 60	AG6	C	374	379	Right-handed 310
Helix 61	AG7	C	380	398	Right-handed alpha
Helix 62	AG8	C	412	429	Right-handed alpha
Helix 63	AG9	C	437	451	Right-handed alpha
Helix 64	AH1	C	457	476	Right-handed alpha
Helix 65	AH2	C	476	487	Right-handed alpha
Helix 66	AH3	C	490	507	Right-handed alpha
Helix 67	AH4	D	122	126	Right-handed 310
Helix 68	AH5	D	137	144	Right-handed alpha
Helix 69	AH6	D	161	176	Right-handed alpha
Helix 70	AH7	D	189	203	Right-handed alpha
Helix 71	AH8	D	225	230	Right-handed alpha
Helix 72	AH9	D	231	246	Right-handed alpha
Helix 73	AI1	D	259	273	Right-handed alpha
Helix 74	AI2	D	284	294	Right-handed alpha
Helix 75	AI3	D	313	316	Right-handed 310
Helix 76	AI4	D	319	326	Right-handed alpha
Helix 77	AI5	D	327	329	Right-handed 310
Helix 78	AI6	D	336	342	Right-handed alpha
Helix 79	AI7	D	364	392	Right-handed alpha
Helix 80	AI8	D	400	415	Right-handed alpha
Helix 81	AI9	D	418	420	Right-handed 310
Helix 82	AJ1	D	421	426	Right-handed alpha
Helix 83	AJ2	D	433	447	Right-handed alpha
Helix 84	AJ3	D	453	458	Right-handed 310
Helix 85	AJ4	D	462	477	Right-handed alpha
Helix 86	AJ5	E	137	143	Right-handed alpha
Helix 87	AJ6	E	161	177	Right-handed alpha
Helix 88	AJ7	E	189	204	Right-handed alpha
Helix 89	AJ8	E	225	230	Right-handed alpha
Helix 90	AJ9	E	231	246	Right-handed alpha
Helix 91	AK1	E	258	273	Right-handed alpha
Helix 92	AK2	E	284	294	Right-handed alpha
Helix 93	AK3	E	312	316	Right-handed 310
Helix 94	AK4	E	319	326	Right-handed alpha
Helix 95	AK5	E	336	341	Right-handed alpha
Helix 96	AK6	E	359	364	Right-handed alpha
Helix 97	AK7	E	364	391	Right-handed alpha
Helix 98	AK8	E	392	396	Right-handed 310
Helix 99	AK9	E	397	415	Right-handed alpha
Helix 100	AL1	E	421	426	Right-handed alpha
Helix 101	AL2	E	433	447	Right-handed alpha
Helix 102	AL3	E	453	457	Right-handed 310
Helix 103	AL4	E	462	473	Right-handed alpha
Helix 104	AL5	F	87	91	Right-handed 310
Helix 105	AL6	F	137	144	Right-handed alpha
Helix 106	AL7	F	161	176	Right-handed alpha
Helix 107	AL8	F	189	202	Right-handed alpha
Helix 108	AL9	F	225	246	Right-handed alpha
Helix 109	AM1	F	258	268	Right-handed alpha
Helix 110	AM2	F	284	294	Right-handed alpha
Helix 111	AM3	F	313	316	Right-handed 310
Helix 112	AM4	F	319	326	Right-handed alpha
Helix 113	AM5	F	327	329	Right-handed 310
Helix 114	AM6	F	336	341	Right-handed alpha
Helix 115	AM7	F	364	392	Right-handed alpha
Helix 116	AM8	F	393	396	Right-handed 310
Helix 117	AM9	F	397	415	Right-handed alpha
Helix 118	AN1	F	418	420	Right-handed 310
Helix 119	AN2	F	421	426	Right-handed alpha
Helix 120	AN3	F	433	447	Right-handed alpha
Helix 121	AN4	F	453	458	Right-handed 310
Helix 122	AN5	F	462	474	Right-handed alpha
Helix 123	AN6	G	2	55	Right-handed alpha
Helix 124	AN7	G	80	99	Right-handed alpha
Helix 125	AN8	G	109	116	Right-handed alpha
Helix 126	AN9	G	137	151	Right-handed alpha
Helix 127	AO1	G	180	186	Right-handed alpha
Helix 128	AO2	G	187	193	Right-handed 310
Helix 129	AO3	G	199	271	Right-handed alpha
Helix 130	AO4	H	101	103	Right-handed 310
Helix 131	AO5	H	104	120	Right-handed alpha
Helix 132	AO6	H	124	146	Right-handed alpha
Helix 133	AO7	I	2	7	Right-handed alpha
Helix 134	AO8	I	10	25	Right-handed alpha
Helix 135	AO9	I	27	35	Right-handed alpha
Helix 136	AP1	J	13	19	Right-handed alpha
Helix 137	AP2	J	20	54	Right-handed alpha
Helix 138	AP3	K	2	13	Right-handed alpha
Helix 139	AP4	K	16	39	Right-handed alpha
Helix 140	AP5	K	42	73	Right-handed alpha
Helix 141	AP6	L	2	16	Right-handed alpha
Helix 142	AP7	L	17	39	Right-handed alpha
Helix 143	AP8	L	42	73	Right-handed alpha
Helix 144	AP9	M	2	14	Right-handed alpha
Helix 145	AQ1	M	17	39	Right-handed alpha
Helix 146	AQ2	M	42	73	Right-handed alpha
Helix 147	AQ3	N	2	15	Right-handed alpha
Helix 148	AQ4	N	18	38	Right-handed alpha
Helix 149	AQ5	N	39	43	Right-handed 310
Helix 150	AQ6	N	45	73	Right-handed alpha
Helix 151	AQ7	O	2	15	Right-handed alpha
Helix 152	AQ8	O	17	39	Right-handed alpha
Helix 153	AQ9	O	40	43	Right-handed 310
Helix 154	AR1	O	45	73	Right-handed alpha
Helix 155	AR2	P	2	15	Right-handed alpha
Helix 156	AR3	P	18	37	Right-handed alpha
Helix 157	AR4	P	39	41	Right-handed 310
Helix 158	AR5	P	42	74	Right-handed alpha
Helix 159	AR6	Q	2	16	Right-handed alpha
Helix 160	AR7	Q	18	37	Right-handed alpha
Helix 161	AR8	Q	45	73	Right-handed alpha
Helix 162	AR9	R	2	16	Right-handed alpha
Helix 163	AS1	R	17	39	Right-handed alpha
Helix 164	AS2	R	42	74	Right-handed alpha
Helix 165	AS3	S	12	28	Right-handed alpha
Helix 166	AS4	S	31	47	Right-handed alpha
Helix 167	AS5	S	48	57	Right-handed alpha
Helix 168	AS6	S	61	76	Right-handed alpha
Helix 169	AS7	S	79	93	Right-handed alpha
Helix 170	AS8	S	94	96	Right-handed 310
Helix 171	AS9	S	97	114	Right-handed alpha
Helix 172	AT1	S	127	140	Right-handed alpha
Helix 173	AT2	S	174	188	Right-handed alpha
Helix 174	AT3	8	1	7	Right-handed 310
Helix 175	AT4	8	8	22	Right-handed alpha
Helix 176	AT5	8	23	29	Right-handed alpha
Helix 177	AT6	a	6	10	Right-handed 310
Helix 178	AT7	a	19	30	Right-handed alpha
Helix 179	AT8	a	40	59	Right-handed alpha
Helix 180	AT9	a	62	86	Right-handed alpha
Helix 181	AU1	a	93	96	Right-handed 310
Helix 182	AU2	a	97	120	Right-handed alpha
Helix 183	AU3	a	120	127	Right-handed alpha
Helix 184	AU4	a	134	137	Right-handed 310
Helix 185	AU5	a	138	182	Right-handed alpha
Helix 186	AU6	a	185	225	Right-handed alpha
Helix 187	AU7	d	11	16	Right-handed alpha
Helix 188	AU8	d	17	19	Right-handed 310
Helix 189	AU9	d	20	22	Right-handed 310
Helix 190	AV1	d	23	44	Right-handed alpha
Helix 191	AV2	d	52	60	Right-handed alpha
Helix 192	AV3	d	62	76	Right-handed alpha
Helix 193	AV4	d	86	123	Right-handed alpha
Helix 194	AV5	d	126	130	Right-handed 310
Helix 195	AV6	d	131	139	Right-handed alpha
Helix 196	AV7	d	140	143	Right-handed 310
Helix 197	AV8	f	15	17	Right-handed 310
Helix 198	AV9	f	18	26	Right-handed alpha
Helix 199	AW1	f	29	49	Right-handed alpha
Helix 200	AW2	f	56	80	Right-handed alpha
Helix 201	AW3	g	21	34	Right-handed alpha
Helix 202	AW4	g	43	61	Right-handed alpha
Helix 203	AW5	g	62	67	Right-handed 310
Helix 204	AW6	g	68	94	Right-handed alpha
Helix 205	AW7	j	3	10	Right-handed alpha
Helix 206	AW8	j	13	19	Right-handed alpha
Helix 207	AW9	j	21	48	Right-handed alpha
Helix 208	AX1	b	19	30	Right-handed alpha
Helix 209	AX2	b	31	48	Right-handed alpha
Helix 210	AX3	b	54	121	Right-handed alpha
Helix 211	AX4	b	122	185	Right-handed alpha
Helix 212	AX5	b	189	209	Right-handed alpha
Helix 213	AX6	h	8	25	Right-handed alpha
Helix 214	AX7	h	32	51	Right-handed alpha
Helix 215	AX8	k	13	18	Right-handed alpha
Helix 216	AX9	k	22	46	Right-handed alpha
Helix 217	AY1	e	7	57	Right-handed alpha

There are 23 sheets in PDB entry 6ZQM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	87	90	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	71	75	anti-parallel
Strand 6	A	38	43	anti-parallel
Strand 7	A	29	33	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	126	128	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	166	169	parallel
Strand 3	A	326	328	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	234	first strand
Strand 2	A	200	206	parallel
Strand 3	A	263	269	parallel
Strand 4	A	320	323	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	87	90	anti-parallel
Strand 3	B	52	55	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	B	71	75	anti-parallel
Strand 6	B	38	43	anti-parallel
Strand 7	B	29	35	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	164	169	parallel
Strand 3	B	320	328	parallel
Strand 4	B	263	269	parallel
Strand 5	B	200	206	parallel
Strand 6	B	230	234	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	28	35	anti-parallel
Strand 3	C	38	43	anti-parallel
Strand 4	C	71	75	anti-parallel
Strand 5	C	60	66	anti-parallel
Strand 6	C	52	54	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	352	first strand
Strand 2	C	164	169	parallel
Strand 3	C	320	327	parallel
Strand 4	C	263	269	parallel
Strand 5	C	199	206	parallel
Strand 6	C	229	234	parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	17	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	57	62	anti-parallel
Strand 4	D	46	52	anti-parallel
Strand 5	D	35	38	anti-parallel
Strand 6	D	75	77	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	112	115	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	156	first strand
Strand 2	D	303	311	parallel
Strand 3	D	250	255	parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	74	77	anti-parallel
Strand 3	E	35	38	anti-parallel
Strand 4	E	46	49	anti-parallel
Strand 5	E	57	62	anti-parallel
Strand 6	E	20	24	anti-parallel
Strand 7	E	12	17	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	113	115	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	334	first strand
Strand 2	E	151	155	parallel
Strand 3	E	303	309	parallel
Strand 4	E	250	255	parallel
Strand 5	E	181	188	parallel
Strand 6	E	215	221	parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	74	77	anti-parallel
Strand 3	F	35	39	anti-parallel
Strand 4	F	46	52	anti-parallel
Strand 5	F	57	62	anti-parallel
Strand 6	F	20	24	anti-parallel
Strand 7	F	12	17	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	85	first strand
Strand 2	F	113	115	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	331	334	first strand
Strand 2	F	152	156	parallel
Strand 3	F	303	311	parallel
Strand 4	F	250	255	parallel
Strand 5	F	180	186	parallel
Strand 6	F	215	220	parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	178	first strand
Strand 2	G	158	164	anti-parallel
Strand 3	G	68	71	parallel
Strand 4	G	105	108	parallel
Strand 5	G	124	128	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	22	first strand
Strand 2	H	89	94	parallel
Strand 3	H	80	84	anti-parallel
Strand 4	H	54	57	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	33	38	anti-parallel
Strand 3	H	61	67	anti-parallel
Strand 4	H	72	77	anti-parallel
Strand 5	H	97	99	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	152	154	first strand
Strand 2	S	118	122	parallel
Strand 3	S	163	166	anti-parallel
Strand 4	S	169	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZQM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQM