Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZQU entry

There are 6 chains in PDB entry 6ZQU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 494
B	SER 92	PRO 163
C	MET 1	GLN 494
D	SER 92	PRO 163
E	MET 1	GLN 494
F	SER 92	PRO 163

There are 48 helices in PDB entry 6ZQU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	131	133	Right-handed 310
Helix 4	AA4	A	192	194	Right-handed 310
Helix 5	AA5	A	210	215	Right-handed alpha
Helix 6	AA6	A	233	236	Right-handed 310
Helix 7	AA7	A	242	246	Right-handed 310
Helix 8	AA8	A	256	264	Right-handed alpha
Helix 9	AA9	A	396	416	Right-handed alpha
Helix 10	AB1	A	417	422	Right-handed 310
Helix 11	AB2	A	427	448	Right-handed alpha
Helix 12	AB3	A	452	470	Right-handed alpha
Helix 13	AB4	A	475	492	Right-handed alpha
Helix 14	AB5	B	117	130	Right-handed alpha
Helix 15	AB6	B	130	146	Right-handed alpha
Helix 16	AB7	B	149	162	Right-handed alpha
Helix 17	AB8	C	1	5	Right-handed 310
Helix 18	AB9	C	100	104	Right-handed 310
Helix 19	AC1	C	131	133	Right-handed 310
Helix 20	AC2	C	192	194	Right-handed 310
Helix 21	AC3	C	210	215	Right-handed alpha
Helix 22	AC4	C	233	236	Right-handed 310
Helix 23	AC5	C	242	246	Right-handed 310
Helix 24	AC6	C	256	263	Right-handed alpha
Helix 25	AC7	C	396	416	Right-handed alpha
Helix 26	AC8	C	417	422	Right-handed 310
Helix 27	AC9	C	427	448	Right-handed alpha
Helix 28	AD1	C	452	470	Right-handed alpha
Helix 29	AD2	C	475	492	Right-handed alpha
Helix 30	AD3	D	117	130	Right-handed alpha
Helix 31	AD4	D	130	146	Right-handed alpha
Helix 32	AD5	D	149	162	Right-handed alpha
Helix 33	AD6	E	100	104	Right-handed 310
Helix 34	AD7	E	131	135	Right-handed 310
Helix 35	AD8	E	165	169	Right-handed 310
Helix 36	AD9	E	192	194	Right-handed 310
Helix 37	AE1	E	210	215	Right-handed alpha
Helix 38	AE2	E	233	236	Right-handed 310
Helix 39	AE3	E	242	246	Right-handed 310
Helix 40	AE4	E	256	264	Right-handed alpha
Helix 41	AE5	E	396	416	Right-handed alpha
Helix 42	AE6	E	417	422	Right-handed 310
Helix 43	AE7	E	427	448	Right-handed alpha
Helix 44	AE8	E	452	470	Right-handed alpha
Helix 45	AE9	E	475	492	Right-handed alpha
Helix 46	AF1	F	117	130	Right-handed alpha
Helix 47	AF2	F	130	146	Right-handed alpha
Helix 48	AF3	F	149	162	Right-handed alpha

There are 20 sheets in PDB entry 6ZQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	30	33	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	276	278	anti-parallel
Strand 5	A	268	272	anti-parallel
Strand 6	A	204	209	anti-parallel
Strand 7	A	196	201	anti-parallel
Strand 8	A	109	129	anti-parallel
Strand 9	A	135	143	first strand
Strand 10	A	160	164	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	196	201	anti-parallel
Strand 4	A	204	209	anti-parallel
Strand 5	A	268	272	anti-parallel
Strand 6	A	276	278	anti-parallel
Strand 7	A	41	50	anti-parallel
Strand 8	A	54	72	first strand
Strand 9	A	220	222	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	180	186	anti-parallel
Strand 4	A	172	174	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	249	252	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	314	first strand
Strand 2	A	320	326	anti-parallel
Strand 3	A	365	370	anti-parallel
Strand 4	A	350	351	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	388	393	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	30	33	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	276	278	anti-parallel
Strand 5	C	268	272	anti-parallel
Strand 6	C	204	209	anti-parallel
Strand 7	C	196	201	anti-parallel
Strand 8	C	109	129	anti-parallel
Strand 9	C	135	141	first strand
Strand 10	C	160	164	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	196	201	anti-parallel
Strand 4	C	204	209	anti-parallel
Strand 5	C	268	272	anti-parallel
Strand 6	C	276	278	anti-parallel
Strand 7	C	41	50	anti-parallel
Strand 8	C	54	72	first strand
Strand 9	C	220	222	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	282	288	anti-parallel
Strand 3	C	180	184	anti-parallel
Strand 4	C	170	174	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	249	252	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	314	first strand
Strand 2	C	320	326	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	374	379	anti-parallel
Strand 3	C	388	393	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	30	33	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	276	278	anti-parallel
Strand 5	E	268	272	anti-parallel
Strand 6	E	204	209	anti-parallel
Strand 7	E	196	201	anti-parallel
Strand 8	E	109	129	anti-parallel
Strand 9	E	137	141	first strand
Strand 10	E	160	164	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	196	201	anti-parallel
Strand 4	E	204	209	anti-parallel
Strand 5	E	268	272	anti-parallel
Strand 6	E	276	278	anti-parallel
Strand 7	E	41	50	anti-parallel
Strand 8	E	54	72	first strand
Strand 9	E	220	222	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	282	288	anti-parallel
Strand 3	E	180	184	anti-parallel
Strand 4	E	172	174	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	249	252	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	314	first strand
Strand 2	E	320	326	anti-parallel
Strand 3	E	365	370	anti-parallel
Strand 4	E	350	351	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	374	379	anti-parallel
Strand 3	E	388	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZQU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQU