Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZQW entry

There are 9 chains in PDB entry 6ZQW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	SER 504
B	VAL 1	HIS 101
D	ILE 1	SER 504
E	VAL 1	HIS 101
G	ILE 1	SER 504
H	VAL 1	HIS 101
I	SER 120	SER 169
F	SER 120	SER 169
C	SER 120	SER 169

There are 42 helices in PDB entry 6ZQW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	131	133	Right-handed 310
Helix 4	AA4	A	216	220	Right-handed alpha
Helix 5	AA5	A	239	242	Right-handed 310
Helix 6	AA6	A	262	270	Right-handed alpha
Helix 7	AA7	A	392	396	Right-handed 310
Helix 8	AA8	A	406	425	Right-handed alpha
Helix 9	AA9	A	437	458	Right-handed alpha
Helix 10	AB1	A	464	479	Right-handed alpha
Helix 11	AB2	A	485	502	Right-handed alpha
Helix 12	AB3	D	82	86	Right-handed 310
Helix 13	AB4	D	100	104	Right-handed 310
Helix 14	AB5	D	131	133	Right-handed 310
Helix 15	AB6	D	216	220	Right-handed alpha
Helix 16	AB7	D	240	242	Right-handed 310
Helix 17	AB8	D	262	270	Right-handed alpha
Helix 18	AB9	D	392	396	Right-handed 310
Helix 19	AC1	D	406	425	Right-handed alpha
Helix 20	AC2	D	437	458	Right-handed alpha
Helix 21	AC3	D	464	479	Right-handed alpha
Helix 22	AC4	D	485	502	Right-handed alpha
Helix 23	AC5	G	82	86	Right-handed 310
Helix 24	AC6	G	100	104	Right-handed 310
Helix 25	AC7	G	131	133	Right-handed 310
Helix 26	AC8	G	216	220	Right-handed alpha
Helix 27	AC9	G	240	242	Right-handed 310
Helix 28	AD1	G	262	270	Right-handed alpha
Helix 29	AD2	G	392	396	Right-handed 310
Helix 30	AD3	G	406	425	Right-handed alpha
Helix 31	AD4	G	437	458	Right-handed alpha
Helix 32	AD5	G	464	479	Right-handed alpha
Helix 33	AD6	G	485	502	Right-handed alpha
Helix 34	AD7	I	122	133	Right-handed alpha
Helix 35	AD8	I	133	146	Right-handed alpha
Helix 36	AD9	I	150	165	Right-handed alpha
Helix 37	AE1	F	122	133	Right-handed alpha
Helix 38	AE2	F	133	146	Right-handed alpha
Helix 39	AE3	F	150	165	Right-handed alpha
Helix 40	AE4	C	122	133	Right-handed alpha
Helix 41	AE5	C	133	146	Right-handed alpha
Helix 42	AE6	C	150	165	Right-handed alpha

There are 35 sheets in PDB entry 6ZQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	165	171	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	282	285	anti-parallel
Strand 5	A	277	279	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	176	180	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	64	first strand
Strand 2	A	120	128	anti-parallel
Strand 3	A	202	207	anti-parallel
Strand 4	A	210	215	anti-parallel
Strand 5	A	274	275	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	73	first strand
Strand 2	A	110	118	anti-parallel
Strand 3	A	90	98	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	256	258	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	340	341	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	327	334	anti-parallel
Strand 3	A	320	321	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	327	334	anti-parallel
Strand 3	A	372	380	anti-parallel
Strand 4	A	358	359	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	347	first strand
Strand 2	A	384	390	anti-parallel
Strand 3	A	397	403	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	10	13	anti-parallel
Strand 3	B	74	79	parallel
Strand 4	B	48	53	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	31	36	anti-parallel
Strand 3	B	67	69	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	30	34	parallel
Strand 3	D	41	50	anti-parallel
Strand 4	D	135	143	anti-parallel
Strand 5	D	165	171	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	30	34	parallel
Strand 3	D	41	50	anti-parallel
Strand 4	D	282	285	anti-parallel
Strand 5	D	277	279	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	25	first strand
Strand 2	D	290	295	anti-parallel
Strand 3	D	186	192	anti-parallel
Strand 4	D	176	180	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	228	first strand
Strand 2	D	55	64	anti-parallel
Strand 3	D	120	128	anti-parallel
Strand 4	D	202	207	anti-parallel
Strand 5	D	210	215	anti-parallel
Strand 6	D	274	275	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	98	first strand
Strand 2	D	110	118	anti-parallel
Strand 3	D	68	73	anti-parallel
Strand 4	E	48	53	parallel
Strand 5	E	74	79	anti-parallel
Strand 6	E	10	13	parallel
Strand 7	E	2	5	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	256	258	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	340	341	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	315	first strand
Strand 2	D	327	334	anti-parallel
Strand 3	D	320	321	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	315	first strand
Strand 2	D	327	334	anti-parallel
Strand 3	D	372	380	anti-parallel
Strand 4	D	358	359	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	347	first strand
Strand 2	D	384	390	anti-parallel
Strand 3	D	397	403	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	26	first strand
Strand 2	E	31	36	anti-parallel
Strand 3	E	67	68	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	30	34	parallel
Strand 3	G	41	50	anti-parallel
Strand 4	G	135	143	anti-parallel
Strand 5	G	165	171	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	30	34	parallel
Strand 3	G	41	50	anti-parallel
Strand 4	G	282	285	anti-parallel
Strand 5	G	277	279	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	25	first strand
Strand 2	G	290	295	anti-parallel
Strand 3	G	186	192	anti-parallel
Strand 4	G	176	180	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	228	first strand
Strand 2	G	55	64	anti-parallel
Strand 3	G	120	128	anti-parallel
Strand 4	G	202	207	anti-parallel
Strand 5	G	210	215	anti-parallel
Strand 6	G	274	275	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	110	118	anti-parallel
Strand 3	G	90	98	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	246	first strand
Strand 2	G	256	258	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	340	341	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	315	first strand
Strand 2	G	327	334	anti-parallel
Strand 3	G	320	321	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	315	first strand
Strand 2	G	327	334	anti-parallel
Strand 3	G	372	380	anti-parallel
Strand 4	G	358	359	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	344	347	first strand
Strand 2	G	384	390	anti-parallel
Strand 3	G	397	403	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	10	13	anti-parallel
Strand 3	H	74	79	parallel
Strand 4	H	48	53	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	26	first strand
Strand 2	H	31	36	anti-parallel
Strand 3	H	67	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZQW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZQW