Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZVZ entry

There are 4 chains in PDB entry 6ZVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	LYS 292
B	SER -1	LYS 292
C	GLY -2	LYS 292
D	GLY -2	LYS 292

There are 24 helices in PDB entry 6ZVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	40	Right-handed alpha
Helix 2	AA2	A	44	55	Right-handed alpha
Helix 3	AA3	A	125	138	Right-handed alpha
Helix 4	AA4	A	142	146	Right-handed 310
Helix 5	AA5	A	147	163	Right-handed alpha
Helix 6	AA6	A	183	218	Right-handed alpha
Helix 7	AA7	B	26	39	Right-handed alpha
Helix 8	AA8	B	44	55	Right-handed alpha
Helix 9	AA9	B	125	138	Right-handed alpha
Helix 10	AB1	B	139	146	Right-handed 310
Helix 11	AB2	B	147	163	Right-handed alpha
Helix 12	AB3	B	183	218	Right-handed alpha
Helix 13	AB4	C	26	39	Right-handed alpha
Helix 14	AB5	C	44	55	Right-handed alpha
Helix 15	AB6	C	125	138	Right-handed alpha
Helix 16	AB7	C	139	146	Right-handed 310
Helix 17	AB8	C	147	163	Right-handed alpha
Helix 18	AB9	C	183	218	Right-handed alpha
Helix 19	AC1	D	26	40	Right-handed alpha
Helix 20	AC2	D	44	55	Right-handed alpha
Helix 21	AC3	D	125	137	Right-handed alpha
Helix 22	AC4	D	138	146	Right-handed 310
Helix 23	AC5	D	147	163	Right-handed alpha
Helix 24	AC6	D	183	218	Right-handed alpha

There are 18 sheets in PDB entry 6ZVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	2	8	anti-parallel
Strand 3	A	11	17	anti-parallel
Strand 4	A	172	177	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	58	62	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	76	83	anti-parallel
Strand 3	A	87	95	anti-parallel
Strand 4	A	98	105	anti-parallel
Strand 5	A	108	116	anti-parallel
Strand 6	D	108	116	anti-parallel
Strand 7	D	98	105	anti-parallel
Strand 8	D	87	95	anti-parallel
Strand 9	D	76	83	anti-parallel
Strand 10	D	68	70	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	223	229	anti-parallel
Strand 4	A	266	270	anti-parallel
Strand 5	A	273	276	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	239	242	anti-parallel
Strand 3	A	288	291	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	2	8	anti-parallel
Strand 3	B	11	17	anti-parallel
Strand 4	B	172	177	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	58	62	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	76	83	anti-parallel
Strand 3	B	87	95	anti-parallel
Strand 4	B	98	105	anti-parallel
Strand 5	B	108	116	anti-parallel
Strand 6	C	108	116	anti-parallel
Strand 7	C	98	105	anti-parallel
Strand 8	C	87	95	anti-parallel
Strand 9	C	76	83	anti-parallel
Strand 10	C	68	70	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	256	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	223	229	anti-parallel
Strand 4	B	266	270	anti-parallel
Strand 5	B	273	276	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	239	242	anti-parallel
Strand 3	B	288	291	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	124	first strand
Strand 2	C	2	8	anti-parallel
Strand 3	C	11	17	anti-parallel
Strand 4	C	172	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	58	62	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	256	first strand
Strand 2	C	232	235	anti-parallel
Strand 3	C	223	229	anti-parallel
Strand 4	C	266	270	anti-parallel
Strand 5	C	273	276	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	239	242	anti-parallel
Strand 3	C	288	291	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	2	8	anti-parallel
Strand 3	D	11	17	anti-parallel
Strand 4	D	172	177	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	58	62	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	256	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	223	229	anti-parallel
Strand 4	D	266	270	anti-parallel
Strand 5	D	273	276	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	239	242	anti-parallel
Strand 3	D	288	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZVZ