Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZY9 entry

There are 12 chains in PDB entry 6ZY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	TYR 152
D	THR 3	TYR 152
I	GLN 2	TYR 152
J	GLN 2	TYR 152
K	LYS 4	TYR 152
L	GLN 2	TYR 152
B	LEU 5	ARG 97
C	GLU 3	HIS 98
F	ASN 7	ASP 264
G	ALA 6	LEU 265
E	LEU 2	MET 257
H	MET 1	GLY 259

There are 71 helices in PDB entry 6ZY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	24	Right-handed alpha
Helix 2	AA2	A	145	152	Right-handed alpha
Helix 3	AA3	D	4	17	Right-handed alpha
Helix 4	AA4	D	147	152	Right-handed alpha
Helix 5	AA5	I	5	24	Right-handed alpha
Helix 6	AA6	I	142	147	Right-handed alpha
Helix 7	AA7	J	5	29	Right-handed alpha
Helix 8	AA8	J	142	152	Right-handed alpha
Helix 9	AA9	K	5	24	Right-handed alpha
Helix 10	AB1	K	146	151	Right-handed alpha
Helix 11	AB2	L	5	19	Right-handed alpha
Helix 12	AB3	L	20	23	Right-handed 310
Helix 13	AB4	L	142	152	Right-handed alpha
Helix 14	AB5	B	25	30	Right-handed alpha
Helix 15	AB6	B	51	60	Right-handed alpha
Helix 16	AB7	B	78	89	Right-handed alpha
Helix 17	AB8	C	25	30	Right-handed alpha
Helix 18	AB9	C	51	69	Right-handed alpha
Helix 19	AC1	C	79	84	Right-handed alpha
Helix 20	AC2	F	47	56	Right-handed alpha
Helix 21	AC3	F	83	87	Right-handed 310
Helix 22	AC4	F	101	107	Right-handed alpha
Helix 23	AC5	F	117	122	Right-handed alpha
Helix 24	AC6	F	122	127	Right-handed alpha
Helix 25	AC7	F	128	133	Right-handed alpha
Helix 26	AC8	F	146	159	Right-handed alpha
Helix 27	AC9	F	176	193	Right-handed alpha
Helix 28	AD1	F	204	209	Right-handed alpha
Helix 29	AD2	F	239	244	Right-handed alpha
Helix 30	AD3	G	47	56	Right-handed alpha
Helix 31	AD4	G	76	81	Right-handed alpha
Helix 32	AD5	G	83	87	Right-handed 310
Helix 33	AD6	G	101	107	Right-handed alpha
Helix 34	AD7	G	117	133	Right-handed alpha
Helix 35	AD8	G	141	145	Right-handed 310
Helix 36	AD9	G	146	159	Right-handed alpha
Helix 37	AE1	G	176	189	Right-handed alpha
Helix 38	AE2	G	204	209	Right-handed alpha
Helix 39	AE3	G	239	244	Right-handed alpha
Helix 40	AE4	E	10	30	Right-handed alpha
Helix 41	AE5	E	40	48	Right-handed alpha
Helix 42	AE6	E	48	53	Right-handed alpha
Helix 43	AE7	E	56	78	Right-handed alpha
Helix 44	AE8	E	102	112	Right-handed alpha
Helix 45	AE9	E	115	126	Right-handed alpha
Helix 46	AF1	E	127	136	Right-handed alpha
Helix 47	AF2	E	138	142	Right-handed 310
Helix 48	AF3	E	144	149	Right-handed alpha
Helix 49	AF4	E	153	167	Right-handed alpha
Helix 50	AF5	E	169	174	Right-handed alpha
Helix 51	AF6	E	181	191	Right-handed alpha
Helix 52	AF7	E	199	221	Right-handed alpha
Helix 53	AF8	E	227	247	Right-handed alpha
Helix 54	AF9	E	247	252	Right-handed alpha
Helix 55	AG1	E	253	256	Right-handed 310
Helix 56	AG2	H	3	30	Right-handed alpha
Helix 57	AG3	H	40	50	Right-handed alpha
Helix 58	AG4	H	52	55	Right-handed 310
Helix 59	AG5	H	56	61	Right-handed alpha
Helix 60	AG6	H	63	78	Right-handed alpha
Helix 61	AG7	H	83	85	Right-handed 310
Helix 62	AG8	H	86	98	Right-handed alpha
Helix 63	AG9	H	100	126	Right-handed alpha
Helix 64	AH1	H	138	143	Right-handed alpha
Helix 65	AH2	H	144	153	Right-handed alpha
Helix 66	AH3	H	154	176	Right-handed alpha
Helix 67	AH4	H	181	186	Right-handed alpha
Helix 68	AH5	H	186	191	Right-handed alpha
Helix 69	AH6	H	199	223	Right-handed alpha
Helix 70	AH7	H	230	245	Right-handed alpha
Helix 71	AH8	H	246	255	Right-handed alpha

There are 20 sheets in PDB entry 6ZY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	71	73	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	114	first strand
Strand 2	A	99	103	anti-parallel
Strand 3	A	137	138	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	80	86	anti-parallel
Strand 3	D	63	73	anti-parallel
Strand 4	D	58	60	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	98	100	anti-parallel
Strand 3	D	137	138	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	45	first strand
Strand 2	I	80	85	anti-parallel
Strand 3	I	63	73	anti-parallel
Strand 4	I	57	60	anti-parallel
Strand 5	I	110	115	parallel
Strand 6	I	98	103	anti-parallel
Strand 7	I	136	137	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	45	first strand
Strand 2	J	80	84	anti-parallel
Strand 3	J	72	73	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	63	66	first strand
Strand 2	J	58	60	anti-parallel
Strand 3	J	110	114	parallel
Strand 4	J	99	103	anti-parallel
Strand 5	J	137	138	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	41	first strand
Strand 2	K	80	87	anti-parallel
Strand 3	K	44	45	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	41	first strand
Strand 2	K	80	87	anti-parallel
Strand 3	K	68	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	59	first strand
Strand 2	K	64	66	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	109	116	first strand
Strand 2	K	97	104	anti-parallel
Strand 3	K	137	138	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	45	first strand
Strand 2	L	80	83	anti-parallel
Strand 3	L	71	73	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	63	66	first strand
Strand 2	L	58	60	anti-parallel
Strand 3	L	110	114	parallel
Strand 4	L	99	103	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	41	43	parallel
Strand 3	B	73	75	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	47	50	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	73	75	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	11	14	anti-parallel
Strand 3	F	63	64	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	167	first strand
Strand 2	F	197	200	parallel
Strand 3	F	37	40	parallel
Strand 4	F	214	219	parallel
Strand 5	F	222	225	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	168	first strand
Strand 2	G	197	200	parallel
Strand 3	G	36	40	parallel
Strand 4	G	214	219	parallel
Strand 5	G	222	223	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	67	first strand
Strand 2	G	70	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZY9