Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZYD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZYD entry

There are 7 chains in PDB entry 6ZYD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	UNK -66	ASP 334
C	UNK -66	ASP 334
A	UNK -66	ASP 334
B	UNK -66	ASP 334
D	UNK -66	ASP 334
F	UNK -66	ASP 334
G	UNK -66	ASP 334

There are 70 helices in PDB entry 6ZYD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	-66	-47	Right-handed alpha
Helix 2	AA2	E	-39	-6	Right-handed alpha
Helix 3	AA3	E	80	108	Right-handed alpha
Helix 4	AA4	E	111	139	Right-handed alpha
Helix 5	AA5	E	141	176	Right-handed alpha
Helix 6	AA6	E	219	223	Right-handed 310
Helix 7	AA7	E	229	232	Right-handed 310
Helix 8	AA8	E	244	249	Right-handed 310
Helix 9	AA9	E	250	263	Right-handed alpha
Helix 10	AB1	E	298	321	Right-handed alpha
Helix 11	AB2	C	-65	-47	Right-handed alpha
Helix 12	AB3	C	-39	-6	Right-handed alpha
Helix 13	AB4	C	80	108	Right-handed alpha
Helix 14	AB5	C	111	139	Right-handed alpha
Helix 15	AB6	C	141	176	Right-handed alpha
Helix 16	AB7	C	219	223	Right-handed 310
Helix 17	AB8	C	229	232	Right-handed 310
Helix 18	AB9	C	244	249	Right-handed 310
Helix 19	AC1	C	250	263	Right-handed alpha
Helix 20	AC2	C	298	321	Right-handed alpha
Helix 21	AC3	A	-65	-47	Right-handed alpha
Helix 22	AC4	A	-39	-6	Right-handed alpha
Helix 23	AC5	A	80	108	Right-handed alpha
Helix 24	AC6	A	111	139	Right-handed alpha
Helix 25	AC7	A	141	176	Right-handed alpha
Helix 26	AC8	A	219	223	Right-handed 310
Helix 27	AC9	A	229	232	Right-handed 310
Helix 28	AD1	A	244	249	Right-handed 310
Helix 29	AD2	A	250	263	Right-handed alpha
Helix 30	AD3	A	298	321	Right-handed alpha
Helix 31	AD4	B	-65	-47	Right-handed alpha
Helix 32	AD5	B	-39	-6	Right-handed alpha
Helix 33	AD6	B	80	108	Right-handed alpha
Helix 34	AD7	B	111	139	Right-handed alpha
Helix 35	AD8	B	141	176	Right-handed alpha
Helix 36	AD9	B	219	223	Right-handed 310
Helix 37	AE1	B	229	232	Right-handed 310
Helix 38	AE2	B	244	249	Right-handed 310
Helix 39	AE3	B	250	263	Right-handed alpha
Helix 40	AE4	B	298	321	Right-handed alpha
Helix 41	AE5	D	-65	-47	Right-handed alpha
Helix 42	AE6	D	-39	-6	Right-handed alpha
Helix 43	AE7	D	80	108	Right-handed alpha
Helix 44	AE8	D	111	139	Right-handed alpha
Helix 45	AE9	D	141	176	Right-handed alpha
Helix 46	AF1	D	219	223	Right-handed 310
Helix 47	AF2	D	229	232	Right-handed 310
Helix 48	AF3	D	244	249	Right-handed 310
Helix 49	AF4	D	250	263	Right-handed alpha
Helix 50	AF5	D	298	321	Right-handed alpha
Helix 51	AF6	F	-65	-47	Right-handed alpha
Helix 52	AF7	F	-39	-6	Right-handed alpha
Helix 53	AF8	F	80	108	Right-handed alpha
Helix 54	AF9	F	111	139	Right-handed alpha
Helix 55	AG1	F	141	176	Right-handed alpha
Helix 56	AG2	F	219	223	Right-handed 310
Helix 57	AG3	F	229	232	Right-handed 310
Helix 58	AG4	F	244	249	Right-handed 310
Helix 59	AG5	F	250	263	Right-handed alpha
Helix 60	AG6	F	298	321	Right-handed alpha
Helix 61	AG7	G	-65	-47	Right-handed alpha
Helix 62	AG8	G	-39	-6	Right-handed alpha
Helix 63	AG9	G	80	108	Right-handed alpha
Helix 64	AH1	G	111	139	Right-handed alpha
Helix 65	AH2	G	141	176	Right-handed alpha
Helix 66	AH3	G	219	223	Right-handed 310
Helix 67	AH4	G	229	232	Right-handed 310
Helix 68	AH5	G	244	249	Right-handed 310
Helix 69	AH6	G	250	263	Right-handed alpha
Helix 70	AH7	G	298	321	Right-handed alpha

There are 15 sheets in PDB entry 6ZYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	190	199	anti-parallel
Strand 3	E	203	208	anti-parallel
Strand 4	E	213	217	anti-parallel
Strand 5	F	226	227	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	D	213	217	anti-parallel
Strand 3	D	203	208	anti-parallel
Strand 4	D	190	199	anti-parallel
Strand 5	D	184	187	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	243	first strand
Strand 2	E	285	294	anti-parallel
Strand 3	E	274	282	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	331	first strand
Strand 2	D	328	331	parallel
Strand 3	B	328	331	parallel
Strand 4	A	328	331	parallel
Strand 5	C	328	331	parallel
Strand 6	G	328	331	parallel
Strand 7	F	328	331	parallel
Strand 8	E	328	331	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	190	199	anti-parallel
Strand 3	C	203	208	anti-parallel
Strand 4	C	213	217	anti-parallel
Strand 5	A	226	227	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	G	213	217	anti-parallel
Strand 3	G	203	208	anti-parallel
Strand 4	G	190	199	anti-parallel
Strand 5	G	184	187	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	243	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	274	282	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	190	199	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	213	217	anti-parallel
Strand 5	B	226	227	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	243	first strand
Strand 2	A	285	294	anti-parallel
Strand 3	A	274	282	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	190	199	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	213	217	anti-parallel
Strand 5	D	226	227	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	243	first strand
Strand 2	B	285	294	anti-parallel
Strand 3	B	274	282	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	243	first strand
Strand 2	D	285	294	anti-parallel
Strand 3	D	274	282	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	190	199	anti-parallel
Strand 3	F	203	208	anti-parallel
Strand 4	F	213	217	anti-parallel
Strand 5	G	226	227	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	243	first strand
Strand 2	F	285	294	anti-parallel
Strand 3	F	274	282	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	243	first strand
Strand 2	G	285	294	anti-parallel
Strand 3	G	274	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZYD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZYD