Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZYE entry

There are 7 chains in PDB entry 6ZYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	UNK -35	ASP 334
C	UNK -35	ASP 334
A	UNK -35	ASP 334
B	UNK -35	ASP 334
D	UNK -35	ASP 334
F	UNK -35	ASP 334
G	UNK -35	ASP 334

There are 56 helices in PDB entry 6ZYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	-35	-16	Right-handed alpha
Helix 2	AA2	E	150	160	Right-handed alpha
Helix 3	AA3	E	160	176	Right-handed alpha
Helix 4	AA4	E	219	224	Right-handed 310
Helix 5	AA5	E	229	232	Right-handed 310
Helix 6	AA6	E	244	249	Right-handed 310
Helix 7	AA7	E	250	264	Right-handed alpha
Helix 8	AA8	E	298	320	Right-handed alpha
Helix 9	AA9	C	-34	-16	Right-handed alpha
Helix 10	AB1	C	150	160	Right-handed alpha
Helix 11	AB2	C	160	176	Right-handed alpha
Helix 12	AB3	C	219	224	Right-handed 310
Helix 13	AB4	C	229	232	Right-handed 310
Helix 14	AB5	C	244	249	Right-handed 310
Helix 15	AB6	C	250	264	Right-handed alpha
Helix 16	AB7	C	298	320	Right-handed alpha
Helix 17	AB8	A	-34	-16	Right-handed alpha
Helix 18	AB9	A	150	160	Right-handed alpha
Helix 19	AC1	A	160	176	Right-handed alpha
Helix 20	AC2	A	219	224	Right-handed 310
Helix 21	AC3	A	229	232	Right-handed 310
Helix 22	AC4	A	244	249	Right-handed 310
Helix 23	AC5	A	250	264	Right-handed alpha
Helix 24	AC6	A	298	320	Right-handed alpha
Helix 25	AC7	B	-34	-16	Right-handed alpha
Helix 26	AC8	B	150	160	Right-handed alpha
Helix 27	AC9	B	160	176	Right-handed alpha
Helix 28	AD1	B	219	224	Right-handed 310
Helix 29	AD2	B	229	232	Right-handed 310
Helix 30	AD3	B	244	249	Right-handed 310
Helix 31	AD4	B	250	264	Right-handed alpha
Helix 32	AD5	B	298	320	Right-handed alpha
Helix 33	AD6	D	-34	-16	Right-handed alpha
Helix 34	AD7	D	150	160	Right-handed alpha
Helix 35	AD8	D	160	176	Right-handed alpha
Helix 36	AD9	D	219	224	Right-handed 310
Helix 37	AE1	D	229	232	Right-handed 310
Helix 38	AE2	D	244	249	Right-handed 310
Helix 39	AE3	D	250	264	Right-handed alpha
Helix 40	AE4	D	298	320	Right-handed alpha
Helix 41	AE5	F	-34	-16	Right-handed alpha
Helix 42	AE6	F	150	160	Right-handed alpha
Helix 43	AE7	F	160	176	Right-handed alpha
Helix 44	AE8	F	219	224	Right-handed 310
Helix 45	AE9	F	229	232	Right-handed 310
Helix 46	AF1	F	244	249	Right-handed 310
Helix 47	AF2	F	250	264	Right-handed alpha
Helix 48	AF3	F	298	320	Right-handed alpha
Helix 49	AF4	G	-34	-16	Right-handed alpha
Helix 50	AF5	G	150	160	Right-handed alpha
Helix 51	AF6	G	160	176	Right-handed alpha
Helix 52	AF7	G	219	224	Right-handed 310
Helix 53	AF8	G	229	232	Right-handed 310
Helix 54	AF9	G	244	249	Right-handed 310
Helix 55	AG1	G	250	264	Right-handed alpha
Helix 56	AG2	G	298	320	Right-handed alpha

There are 22 sheets in PDB entry 6ZYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	186	first strand
Strand 2	E	193	198	anti-parallel
Strand 3	E	203	208	anti-parallel
Strand 4	E	213	217	anti-parallel
Strand 5	F	226	227	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	D	213	217	anti-parallel
Strand 3	D	203	208	anti-parallel
Strand 4	D	193	198	anti-parallel
Strand 5	D	184	186	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	243	first strand
Strand 2	E	285	294	anti-parallel
Strand 3	E	274	275	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	243	first strand
Strand 2	E	285	294	anti-parallel
Strand 3	E	278	282	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	332	first strand
Strand 2	D	328	332	parallel
Strand 3	B	328	332	parallel
Strand 4	A	328	332	parallel
Strand 5	C	328	332	parallel
Strand 6	G	328	332	parallel
Strand 7	F	328	332	parallel
Strand 8	E	328	332	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	193	198	anti-parallel
Strand 3	C	203	208	anti-parallel
Strand 4	C	213	217	anti-parallel
Strand 5	A	226	227	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	G	213	217	anti-parallel
Strand 3	G	203	208	anti-parallel
Strand 4	G	193	198	anti-parallel
Strand 5	G	184	186	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	243	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	274	275	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	243	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	278	282	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	213	217	anti-parallel
Strand 5	B	226	227	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	243	first strand
Strand 2	A	285	294	anti-parallel
Strand 3	A	274	275	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	243	first strand
Strand 2	A	285	294	anti-parallel
Strand 3	A	278	282	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	213	217	anti-parallel
Strand 5	D	226	227	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	243	first strand
Strand 2	B	285	294	anti-parallel
Strand 3	B	274	275	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	243	first strand
Strand 2	B	285	294	anti-parallel
Strand 3	B	278	282	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	243	first strand
Strand 2	D	285	294	anti-parallel
Strand 3	D	274	275	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	243	first strand
Strand 2	D	285	294	anti-parallel
Strand 3	D	278	282	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	186	first strand
Strand 2	F	193	198	anti-parallel
Strand 3	F	203	208	anti-parallel
Strand 4	F	213	217	anti-parallel
Strand 5	G	226	227	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	243	first strand
Strand 2	F	285	294	anti-parallel
Strand 3	F	274	275	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	243	first strand
Strand 2	F	285	294	anti-parallel
Strand 3	F	278	282	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	243	first strand
Strand 2	G	285	294	anti-parallel
Strand 3	G	274	275	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	243	first strand
Strand 2	G	285	294	anti-parallel
Strand 3	G	278	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZYE