Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ZYK entry

There is 1 chain in PDB entry 6ZYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7VAL 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6ZYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
25 47Right-handed alpha
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
63 71Right-handed alpha
Helix 6
AA6
A
72 84Right-handed alpha
Helix 7
AA7
A
110 114Right-handed 310
Helix 8
AA8
A
118 122Right-handed alpha
Helix 9
AA9
A
252 274Right-handed alpha
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There are 3 sheets in PDB entry 6ZYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
123 129anti-parallel
Strand 4
A
209 217anti-parallel
Strand 5
A
87 97anti-parallel
Strand 6
A
229 234anti-parallel
Strand 7
A
242 243parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
198 200anti-parallel
Strand 3
A
140 143anti-parallel
Strand 4
A
179 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
222 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il