Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZYX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZYX entry

There are 10 chains in PDB entry 6ZYX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 1031	ARG 1361
J	ILE 10	GLY 93
K	GLN 17	GLN 111
L	PRO 15	GLY 111
M	ASN 2	ALA 87
N	TYR 24	GLU 132
O	GLU 7	VAL 117
Y	MET 1	ASN 1196
d	LEU 75	GLU 188
e	ILE 18	VAL 66

There are 73 helices in PDB entry 6ZYX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1031	1041	Right-handed alpha
Helix 2	AA2	C	1044	1055	Right-handed alpha
Helix 3	AA3	C	1091	1124	Right-handed alpha
Helix 4	AA4	C	1126	1131	Right-handed alpha
Helix 5	AA5	C	1134	1152	Right-handed alpha
Helix 6	AA6	C	1153	1167	Right-handed alpha
Helix 7	AA7	C	1172	1204	Right-handed alpha
Helix 8	AA8	C	1204	1231	Right-handed alpha
Helix 9	AA9	C	1244	1274	Right-handed alpha
Helix 10	AB1	C	1280	1310	Right-handed alpha
Helix 11	AB2	C	1331	1339	Right-handed alpha
Helix 12	AB3	C	1347	1361	Right-handed alpha
Helix 13	AB4	J	21	36	Right-handed alpha
Helix 14	AB5	J	38	54	Right-handed alpha
Helix 15	AB6	K	33	52	Right-handed alpha
Helix 16	AB7	K	57	72	Right-handed alpha
Helix 17	AB8	L	27	45	Right-handed alpha
Helix 18	AB9	L	49	62	Right-handed alpha
Helix 19	AC1	M	13	31	Right-handed alpha
Helix 20	AC2	M	33	49	Right-handed alpha
Helix 21	AC3	N	30	47	Right-handed alpha
Helix 22	AC4	N	52	73	Right-handed alpha
Helix 23	AC5	O	9	25	Right-handed alpha
Helix 24	AC6	O	31	36	Right-handed alpha
Helix 25	AC7	O	42	61	Right-handed alpha
Helix 26	AC8	Y	2	9	Right-handed alpha
Helix 27	AC9	Y	10	14	Right-handed 310
Helix 28	AD1	Y	18	37	Right-handed alpha
Helix 29	AD2	Y	53	63	Right-handed alpha
Helix 30	AD3	Y	68	74	Right-handed alpha
Helix 31	AD4	Y	78	82	Right-handed 310
Helix 32	AD5	Y	98	112	Right-handed alpha
Helix 33	AD6	Y	121	127	Right-handed alpha
Helix 34	AD7	Y	127	144	Right-handed alpha
Helix 35	AD8	Y	160	167	Right-handed alpha
Helix 36	AD9	Y	167	174	Right-handed alpha
Helix 37	AE1	Y	182	187	Right-handed alpha
Helix 38	AE2	Y	192	201	Right-handed alpha
Helix 39	AE3	Y	204	214	Right-handed alpha
Helix 40	AE4	Y	214	233	Right-handed alpha
Helix 41	AE5	Y	235	240	Right-handed 310
Helix 42	AE6	Y	242	247	Right-handed alpha
Helix 43	AE7	Y	247	259	Right-handed alpha
Helix 44	AE8	Y	260	267	Right-handed alpha
Helix 45	AE9	Y	281	284	Right-handed 310
Helix 46	AF1	Y	295	299	Right-handed 310
Helix 47	AF2	Y	355	389	Right-handed alpha
Helix 48	AF3	Y	390	393	Right-handed 310
Helix 49	AF4	Y	394	410	Right-handed alpha
Helix 50	AF5	Y	415	420	Right-handed alpha
Helix 51	AF6	Y	421	423	Right-handed 310
Helix 52	AF7	Y	446	450	Right-handed 310
Helix 53	AF8	Y	508	516	Right-handed alpha
Helix 54	AF9	Y	544	550	Right-handed alpha
Helix 55	AG1	Y	622	628	Right-handed alpha
Helix 56	AG2	Y	628	640	Right-handed alpha
Helix 57	AG3	Y	650	656	Right-handed alpha
Helix 58	AG4	Y	657	665	Right-handed alpha
Helix 59	AG5	Y	682	699	Right-handed alpha
Helix 60	AG6	Y	709	716	Right-handed alpha
Helix 61	AG7	Y	741	750	Right-handed alpha
Helix 62	AG8	Y	765	772	Right-handed alpha
Helix 63	AG9	Y	773	789	Right-handed alpha
Helix 64	AH1	Y	805	816	Right-handed alpha
Helix 65	AH2	Y	816	823	Right-handed alpha
Helix 66	AH3	Y	869	884	Right-handed alpha
Helix 67	AH4	Y	898	908	Right-handed alpha
Helix 68	AH5	Y	913	923	Right-handed alpha
Helix 69	AH6	Y	949	962	Right-handed alpha
Helix 70	AH7	Y	1071	1082	Right-handed alpha
Helix 71	AH8	Y	1092	1104	Right-handed alpha
Helix 72	AH9	Y	1178	1196	Right-handed alpha
Helix 73	AI1	d	119	139	Right-handed alpha

There are 16 sheets in PDB entry 6ZYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	82	first strand
Strand 2	J	85	91	anti-parallel
Strand 3	J	58	73	anti-parallel
Strand 4	d	180	183	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	20	first strand
Strand 2	K	25	26	anti-parallel
Strand 3	K	95	99	anti-parallel
Strand 4	K	104	109	anti-parallel
Strand 5	K	76	85	anti-parallel
Strand 6	J	58	73	anti-parallel
Strand 7	d	186	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	91	first strand
Strand 2	e	56	57	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	24	first strand
Strand 2	L	88	97	anti-parallel
Strand 3	L	104	110	anti-parallel
Strand 4	L	74	86	anti-parallel
Strand 5	M	53	65	anti-parallel
Strand 6	d	171	174	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	10	first strand
Strand 2	M	73	77	anti-parallel
Strand 3	M	80	86	anti-parallel
Strand 4	M	53	65	anti-parallel
Strand 5	L	74	86	anti-parallel
Strand 6	e	48	51	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	111	116	first strand
Strand 2	N	121	126	anti-parallel
Strand 3	N	83	88	anti-parallel
Strand 4	O	82	86	anti-parallel
Strand 5	e	26	27	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	95	102	first strand
Strand 2	O	107	115	anti-parallel
Strand 3	O	66	74	anti-parallel
Strand 4	N	95	100	anti-parallel
Strand 5	d	106	107	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	116	118	first strand
Strand 2	Y	93	96	parallel
Strand 3	Y	85	89	anti-parallel
Strand 4	Y	40	44	anti-parallel
Strand 5	Y	149	150	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	276	279	first strand
Strand 2	Y	309	315	anti-parallel
Strand 3	Y	322	328	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	338	342	first strand
Strand 2	Y	348	352	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	436	437	first strand
Strand 2	Y	425	433	anti-parallel
Strand 3	Y	455	466	anti-parallel
Strand 4	Y	474	486	anti-parallel
Strand 5	Y	491	493	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	575	580	first strand
Strand 2	Y	566	571	anti-parallel
Strand 3	Y	556	562	anti-parallel
Strand 4	Y	534	541	anti-parallel
Strand 5	Y	615	619	anti-parallel
Strand 6	Y	597	601	anti-parallel
Strand 7	Y	587	590	anti-parallel
Strand 8	Y	645	646	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	759	761	first strand
Strand 2	Y	795	797	parallel
Strand 3	Y	729	733	parallel
Strand 4	Y	824	829	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	832	833	first strand
Strand 2	Y	863	864	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	860	861	first strand
Strand 2	Y	888	889	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	938	941	first strand
Strand 2	Y	1084	1089	anti-parallel
Strand 3	Y	1016	1024	anti-parallel
Strand 4	Y	1035	1040	anti-parallel
Strand 5	Y	1043	1048	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZYX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZYX