Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZZI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ZZI entry

There are 6 chains in PDB entry 6ZZI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 435	LEU 675
B	LEU 437	LEU 675
C	SER 436	LEU 675
D	GLY 435	LEU 675
E	LEU 437	LEU 675
F	LEU 437	GLY 543

There are 54 helices in PDB entry 6ZZI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	445	461	Right-handed alpha
Helix 2	AA2	A	473	492	Right-handed alpha
Helix 3	AA3	A	497	512	Right-handed alpha
Helix 4	AA4	A	551	555	Right-handed 310
Helix 5	AA5	A	556	573	Right-handed alpha
Helix 6	AA6	A	577	582	Right-handed 310
Helix 7	AA7	A	590	595	Right-handed 310
Helix 8	AA8	A	649	667	Right-handed alpha
Helix 9	AA9	A	670	674	Right-handed 310
Helix 10	AB1	B	445	461	Right-handed alpha
Helix 11	AB2	B	473	492	Right-handed alpha
Helix 12	AB3	B	497	512	Right-handed alpha
Helix 13	AB4	B	551	555	Right-handed 310
Helix 14	AB5	B	556	573	Right-handed alpha
Helix 15	AB6	B	577	582	Right-handed 310
Helix 16	AB7	B	590	595	Right-handed 310
Helix 17	AB8	B	649	667	Right-handed alpha
Helix 18	AB9	B	670	674	Right-handed 310
Helix 19	AC1	C	445	461	Right-handed alpha
Helix 20	AC2	C	473	492	Right-handed alpha
Helix 21	AC3	C	497	512	Right-handed alpha
Helix 22	AC4	C	551	555	Right-handed 310
Helix 23	AC5	C	556	573	Right-handed alpha
Helix 24	AC6	C	577	582	Right-handed alpha
Helix 25	AC7	C	590	595	Right-handed 310
Helix 26	AC8	C	649	667	Right-handed alpha
Helix 27	AC9	C	670	674	Right-handed 310
Helix 28	AD1	D	445	461	Right-handed alpha
Helix 29	AD2	D	473	492	Right-handed alpha
Helix 30	AD3	D	497	512	Right-handed alpha
Helix 31	AD4	D	551	555	Right-handed 310
Helix 32	AD5	D	556	573	Right-handed alpha
Helix 33	AD6	D	577	582	Right-handed 310
Helix 34	AD7	D	590	595	Right-handed 310
Helix 35	AD8	D	649	667	Right-handed alpha
Helix 36	AD9	D	670	674	Right-handed 310
Helix 37	AE1	E	445	461	Right-handed alpha
Helix 38	AE2	E	473	492	Right-handed alpha
Helix 39	AE3	E	497	512	Right-handed alpha
Helix 40	AE4	E	551	555	Right-handed 310
Helix 41	AE5	E	556	573	Right-handed alpha
Helix 42	AE6	E	577	582	Right-handed 310
Helix 43	AE7	E	590	595	Right-handed 310
Helix 44	AE8	E	649	667	Right-handed alpha
Helix 45	AE9	E	670	674	Right-handed 310
Helix 46	AF1	F	445	461	Right-handed alpha
Helix 47	AF2	F	473	492	Right-handed alpha
Helix 48	AF3	F	497	512	Right-handed alpha
Helix 49	AF4	F	551	555	Right-handed 310
Helix 50	AF5	F	556	573	Right-handed alpha
Helix 51	AF6	F	577	582	Right-handed 310
Helix 52	AF7	F	590	595	Right-handed 310
Helix 53	AF8	F	649	667	Right-handed alpha
Helix 54	AF9	F	670	674	Right-handed 310

There are 23 sheets in PDB entry 6ZZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	443	first strand
Strand 2	C	525	528	anti-parallel
Strand 3	C	517	520	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	472	first strand
Strand 2	A	628	644	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	586	589	parallel
Strand 5	A	534	536	parallel
Strand 6	A	548	549	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	472	first strand
Strand 2	A	628	644	anti-parallel
Strand 3	A	617	625	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	520	first strand
Strand 2	A	525	528	anti-parallel
Strand 3	B	441	443	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	543	545	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	472	first strand
Strand 2	B	628	644	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	586	589	parallel
Strand 5	B	534	536	parallel
Strand 6	B	548	549	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	472	first strand
Strand 2	B	628	644	anti-parallel
Strand 3	B	617	625	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	520	first strand
Strand 2	B	525	528	anti-parallel
Strand 3	C	440	443	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	472	first strand
Strand 2	C	628	644	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	586	589	parallel
Strand 5	C	534	536	parallel
Strand 6	C	548	549	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	472	first strand
Strand 2	C	628	644	anti-parallel
Strand 3	C	617	625	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	540	first strand
Strand 2	C	543	545	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	443	first strand
Strand 2	F	525	528	anti-parallel
Strand 3	F	517	520	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	472	first strand
Strand 2	D	628	644	anti-parallel
Strand 3	D	609	612	anti-parallel
Strand 4	D	586	589	parallel
Strand 5	D	534	536	parallel
Strand 6	D	548	549	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	472	first strand
Strand 2	D	628	644	anti-parallel
Strand 3	D	617	625	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	520	first strand
Strand 2	D	525	528	anti-parallel
Strand 3	E	441	443	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	540	first strand
Strand 2	D	543	545	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	464	472	first strand
Strand 2	E	628	644	anti-parallel
Strand 3	E	609	612	anti-parallel
Strand 4	E	586	589	parallel
Strand 5	E	534	536	parallel
Strand 6	E	548	549	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	464	472	first strand
Strand 2	E	628	644	anti-parallel
Strand 3	E	617	625	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	517	520	first strand
Strand 2	E	525	528	anti-parallel
Strand 3	F	441	443	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	540	first strand
Strand 2	E	543	545	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	464	472	first strand
Strand 2	F	628	644	anti-parallel
Strand 3	F	609	612	anti-parallel
Strand 4	F	586	589	parallel
Strand 5	F	534	536	parallel
Strand 6	F	548	549	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	464	472	first strand
Strand 2	F	628	644	anti-parallel
Strand 3	F	617	625	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	540	first strand
Strand 2	F	543	545	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ZZI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ZZI