Analysis of interatomic Contacts of Structural Units in PDB entry:
7A0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7A0T entry

There are 2 chains in PDB entry 7A0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 24VAL 348
B
 PRO 23VAL 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7A0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 51Right-handed alpha
Helix 2
AA2
A
52 56Right-handed 310
Helix 3
AA3
A
197 201Right-handed 310
Helix 4
AA4
B
47 51Right-handed 310
Helix 5
AA5
B
52 56Right-handed 310
Helix 6
AA6
B
197 201Right-handed 310
Helix 7
1
A
47 50Right-handed alpha
Helix 8
2
A
53 55Right-handed 310
Helix 9
3
A
198 200Right-handed 310
Helix 10
4
B
48 50Right-handed 310
Helix 11
5
B
53 55Right-handed 310
Helix 12
6
B
198 200Right-handed 310
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There are 10 sheets in PDB entry 7A0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
173 178anti-parallel
Strand 3
A
202 210anti-parallel
Strand 4
A
58 66anti-parallel
Strand 5
A
72 81anti-parallel
Strand 6
A
86 94anti-parallel
Strand 7
A
100 107anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
135 141anti-parallel
Strand 4
A
146 152anti-parallel
Strand 5
A
182 189anti-parallel
Strand 6
A
192 195anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
171 174anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 263first strand
Strand 2
A
245 253anti-parallel
Strand 3
A
232 240anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
331 343anti-parallel
Strand 6
A
318 328anti-parallel
Strand 7
A
295 301anti-parallel
Strand 8
A
286 291anti-parallel
Strand 9
A
264 269anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
282 284anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
173 178anti-parallel
Strand 3
B
202 210anti-parallel
Strand 4
B
58 66anti-parallel
Strand 5
B
72 81anti-parallel
Strand 6
B
86 94anti-parallel
Strand 7
B
100 107anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 120first strand
Strand 2
B
123 127anti-parallel
Strand 3
B
136 141anti-parallel
Strand 4
B
146 152anti-parallel
Strand 5
B
182 189anti-parallel
Strand 6
B
192 195anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 168first strand
Strand 2
B
171 174anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 263first strand
Strand 2
B
245 253anti-parallel
Strand 3
B
232 240anti-parallel
Strand 4
B
218 225anti-parallel
Strand 5
B
331 343anti-parallel
Strand 6
B
318 328anti-parallel
Strand 7
B
295 301anti-parallel
Strand 8
B
286 291anti-parallel
Strand 9
B
264 269anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 275first strand
Strand 2
B
282 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il