Analysis of interatomic Contacts of Structural Units in PDB entry:
7A17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7A17 entry

There are 6 chains in PDB entry 7A17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 528	VAL 873
B	GLN 1	THR 119
C	LYS 529	VAL 873
D	GLN 1	HIS 123
E	LYS 529	VAL 873
F	GLN 1	HIS 125

There are 48 helices in PDB entry 7A17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	551	555	Right-handed 310
Helix 2	AA2	A	558	563	Right-handed alpha
Helix 3	AA3	A	564	569	Right-handed alpha
Helix 4	AA4	A	571	575	Right-handed 310
Helix 5	AA5	A	596	602	Right-handed alpha
Helix 6	AA6	A	605	620	Right-handed alpha
Helix 7	AA7	A	644	648	Right-handed 310
Helix 8	AA8	A	662	665	Right-handed 310
Helix 9	AA9	A	696	711	Right-handed alpha
Helix 10	AB1	A	720	722	Right-handed 310
Helix 11	AB2	A	738	749	Right-handed alpha
Helix 12	AB3	A	750	757	Right-handed alpha
Helix 13	AB4	A	758	765	Right-handed alpha
Helix 14	AB5	A	814	825	Right-handed alpha
Helix 15	AB6	B	28	32	Right-handed 310
Helix 16	AB7	B	61	64	Right-handed 310
Helix 17	AB8	B	86	90	Right-handed 310
Helix 18	AB9	B	105	109	Right-handed 310
Helix 19	AC1	C	558	563	Right-handed alpha
Helix 20	AC2	C	564	569	Right-handed alpha
Helix 21	AC3	C	571	575	Right-handed 310
Helix 22	AC4	C	596	602	Right-handed alpha
Helix 23	AC5	C	605	620	Right-handed alpha
Helix 24	AC6	C	644	648	Right-handed 310
Helix 25	AC7	C	696	711	Right-handed alpha
Helix 26	AC8	C	720	722	Right-handed 310
Helix 27	AC9	C	738	749	Right-handed alpha
Helix 28	AD1	C	750	757	Right-handed alpha
Helix 29	AD2	C	758	766	Right-handed alpha
Helix 30	AD3	C	814	823	Right-handed alpha
Helix 31	AD4	D	28	32	Right-handed 310
Helix 32	AD5	D	61	64	Right-handed 310
Helix 33	AD6	D	86	90	Right-handed 310
Helix 34	AD7	D	105	109	Right-handed 310
Helix 35	AD8	E	551	555	Right-handed 310
Helix 36	AD9	E	558	563	Right-handed alpha
Helix 37	AE1	E	564	569	Right-handed alpha
Helix 38	AE2	E	605	620	Right-handed alpha
Helix 39	AE3	E	644	648	Right-handed 310
Helix 40	AE4	E	696	711	Right-handed alpha
Helix 41	AE5	E	720	722	Right-handed 310
Helix 42	AE6	E	738	749	Right-handed alpha
Helix 43	AE7	E	750	757	Right-handed alpha
Helix 44	AE8	E	758	766	Right-handed alpha
Helix 45	AE9	F	28	32	Right-handed 310
Helix 46	AF1	F	61	64	Right-handed 310
Helix 47	AF2	F	86	90	Right-handed 310
Helix 48	AF3	F	105	109	Right-handed 310

There are 18 sheets in PDB entry 7A17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	633	first strand
Strand 2	A	636	642	anti-parallel
Strand 3	A	584	590	anti-parallel
Strand 4	A	529	541	parallel
Strand 5	A	862	872	anti-parallel
Strand 6	A	845	851	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	661	first strand
Strand 2	A	666	678	anti-parallel
Strand 3	A	681	689	anti-parallel
Strand 4	A	724	730	parallel
Strand 5	A	806	812	anti-parallel
Strand 6	A	774	775	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	717	718	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	34	39	anti-parallel
Strand 4	B	91	97	anti-parallel
Strand 5	B	111	112	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	34	39	anti-parallel
Strand 4	B	91	97	anti-parallel
Strand 5	B	116	118	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	626	633	first strand
Strand 2	C	636	642	anti-parallel
Strand 3	C	584	590	anti-parallel
Strand 4	C	531	541	parallel
Strand 5	C	862	870	anti-parallel
Strand 6	C	845	851	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	659	first strand
Strand 2	C	670	678	anti-parallel
Strand 3	C	681	689	anti-parallel
Strand 4	C	724	730	parallel
Strand 5	C	806	812	anti-parallel
Strand 6	C	774	775	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	713	first strand
Strand 2	C	717	718	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	116	121	parallel
Strand 3	D	91	97	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	116	121	parallel
Strand 3	D	91	97	anti-parallel
Strand 4	D	111	112	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	626	633	first strand
Strand 2	E	636	642	anti-parallel
Strand 3	E	584	590	anti-parallel
Strand 4	E	531	541	parallel
Strand 5	E	862	870	anti-parallel
Strand 6	E	845	851	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	650	659	first strand
Strand 2	E	670	678	anti-parallel
Strand 3	E	681	689	anti-parallel
Strand 4	E	724	730	parallel
Strand 5	E	806	812	anti-parallel
Strand 6	E	774	775	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	712	713	first strand
Strand 2	E	717	718	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	116	121	parallel
Strand 3	F	91	97	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	116	121	parallel
Strand 3	F	91	97	anti-parallel
Strand 4	F	111	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7A17

Analysis of interatomic Contacts of Structural Units in PDB entry:
7A17