Analysis of interatomic Contacts of Structural Units in PDB entry:
7A59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7A59 entry

There are 3 chains in PDB entry 7A59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1060	GLU 1562
B	THR 1060	LYS 1578
C	SER 1061	LYS 1339

There are 23 helices in PDB entry 7A59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1061	1065	Right-handed alpha
Helix 2	2	A	1067	1069	Right-handed 310
Helix 3	3	A	1171	1174	Right-handed 310
Helix 4	4	A	1337	1340	Right-handed alpha
Helix 5	5	A	1378	1387	Right-handed alpha
Helix 6	6	A	1391	1394	Right-handed alpha
Helix 7	7	A	1523	1527	Right-handed 310
Helix 8	8	B	1061	1065	Right-handed alpha
Helix 9	9	B	1067	1069	Right-handed 310
Helix 10	10	B	1171	1174	Right-handed 310
Helix 11	11	B	1337	1340	Right-handed alpha
Helix 12	12	B	1378	1387	Right-handed alpha
Helix 13	13	B	1391	1393	Right-handed 310
Helix 14	14	B	1523	1527	Right-handed 310
Helix 15	15	B	1533	1536	Right-handed alpha
Helix 16	16	C	1062	1065	Right-handed alpha
Helix 17	17	C	1067	1069	Right-handed 310
Helix 18	18	C	1171	1174	Right-handed 310
Helix 19	19	C	1337	1340	Right-handed alpha
Helix 20	20	C	1378	1387	Right-handed alpha
Helix 21	21	C	1391	1393	Right-handed 310
Helix 22	22	C	1523	1527	Right-handed 310
Helix 23	23	C	1533	1536	Right-handed alpha

There are 32 sheets in PDB entry 7A59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1086	1095	first strand
Strand 2	A	1100	1111	anti-parallel
Strand 3	A	1423	1431	anti-parallel
Strand 4	A	1260	1264	anti-parallel
Strand 5	A	1254	1257	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1435	1437	first strand
Strand 2	A	1116	1122	anti-parallel
Strand 3	A	1131	1143	anti-parallel
Strand 4	A	1230	1239	anti-parallel
Strand 5	A	1245	1248	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1181	1186	first strand
Strand 2	A	1205	1214	anti-parallel
Strand 3	A	1156	1164	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1144	1153	first strand
Strand 2	A	1220	1228	anti-parallel
Strand 3	A	1277	1282	anti-parallel
Strand 4	A	1295	1300	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1331	1333	first strand
Strand 2	A	1289	1291	anti-parallel
Strand 3	A	1283	1286	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1318	1320	first strand
Strand 2	A	1347	1349	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1355	1359	first strand
Strand 2	A	1367	1371	anti-parallel
Strand 3	A	1558	1561	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1487	1489	first strand
Strand 2	A	1505	1511	anti-parallel
Strand 3	A	1462	1469	anti-parallel
Strand 4	A	1446	1454	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1475	1479	first strand
Strand 2	A	1493	1497	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1480	1482	first strand
Strand 2	A	1517	1522	anti-parallel
Strand 3	A	1537	1541	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1395	1403	first strand
Strand 2	A	1410	1417	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1096	first strand
Strand 2	B	1099	1111	anti-parallel
Strand 3	B	1423	1430	anti-parallel
Strand 4	B	1260	1264	anti-parallel
Strand 5	B	1254	1257	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1435	1437	first strand
Strand 2	B	1116	1122	anti-parallel
Strand 3	B	1131	1143	anti-parallel
Strand 4	B	1230	1239	anti-parallel
Strand 5	B	1245	1248	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1181	1186	first strand
Strand 2	B	1205	1214	anti-parallel
Strand 3	B	1156	1164	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1144	1153	first strand
Strand 2	B	1220	1228	anti-parallel
Strand 3	B	1277	1282	anti-parallel
Strand 4	B	1295	1300	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1289	1291	first strand
Strand 2	B	1331	1333	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1355	1359	first strand
Strand 2	B	1367	1371	anti-parallel
Strand 3	B	1558	1560	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1487	1489	first strand
Strand 2	B	1505	1511	anti-parallel
Strand 3	B	1462	1469	anti-parallel
Strand 4	B	1446	1454	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1475	1479	first strand
Strand 2	B	1493	1497	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1480	1482	first strand
Strand 2	B	1517	1522	anti-parallel
Strand 3	B	1537	1541	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1395	1403	first strand
Strand 2	B	1410	1417	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1086	1094	first strand
Strand 2	C	1101	1111	anti-parallel
Strand 3	C	1423	1431	anti-parallel
Strand 4	C	1260	1264	anti-parallel
Strand 5	C	1254	1257	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1435	1437	first strand
Strand 2	C	1116	1122	anti-parallel
Strand 3	C	1131	1143	anti-parallel
Strand 4	C	1230	1239	anti-parallel
Strand 5	C	1245	1248	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1181	1186	first strand
Strand 2	C	1205	1214	anti-parallel
Strand 3	C	1156	1164	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1144	1153	first strand
Strand 2	C	1220	1228	anti-parallel
Strand 3	C	1277	1282	anti-parallel
Strand 4	C	1295	1300	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1331	1333	first strand
Strand 2	C	1289	1291	anti-parallel
Strand 3	C	1283	1286	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1318	1320	first strand
Strand 2	C	1347	1349	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1355	1359	first strand
Strand 2	C	1367	1371	anti-parallel
Strand 3	C	1558	1561	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1487	1489	first strand
Strand 2	C	1505	1511	anti-parallel
Strand 3	C	1462	1469	anti-parallel
Strand 4	C	1446	1454	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1475	1479	first strand
Strand 2	C	1493	1497	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1480	1482	first strand
Strand 2	C	1517	1522	anti-parallel
Strand 3	C	1537	1541	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1395	1403	first strand
Strand 2	C	1410	1417	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7A59

Analysis of interatomic Contacts of Structural Units in PDB entry:
7A59