Analysis of interatomic Contacts of Structural Units in PDB entry:
7A5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7A5C entry

There are 6 chains in PDB entry 7A5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -16GLN 53
A
 LEU 55TYR 172
A
 ALA 174MET 299
B
 ASP -16GLN 53
B
 LEU 55TYR 172
B
 ALA 174MET 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 7A5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-11 -5Right-handed alpha
Helix 2
AA2
A
14 31Right-handed alpha
Helix 3
AA3
A
47 57Right-handed alpha
Helix 4
AA4
A
66 73Right-handed 310
Helix 5
AA5
A
74 82Right-handed 310
Helix 6
AA6
A
88 98Right-handed alpha
Helix 7
AA7
A
98 113Right-handed alpha
Helix 8
AA8
A
135 140Right-handed 310
Helix 9
AA9
A
149 159Right-handed alpha
Helix 10
AB1
A
167 169Right-handed 310
Helix 11
AB2
A
170 177Right-handed alpha
Helix 12
AB3
A
187 193Right-handed alpha
Helix 13
AB4
A
194 199Right-handed 310
Helix 14
AB5
A
218 223Right-handed alpha
Helix 15
AB6
A
225 261Right-handed alpha
Helix 16
AB7
A
270 277Right-handed alpha
Helix 17
AB8
A
277 288Right-handed alpha
Helix 18
AB9
A
291 298Right-handed alpha
Helix 19
AC1
B
-11 -5Right-handed alpha
Helix 20
AC2
B
14 31Right-handed alpha
Helix 21
AC3
B
47 57Right-handed alpha
Helix 22
AC4
B
66 73Right-handed 310
Helix 23
AC5
B
74 82Right-handed 310
Helix 24
AC6
B
88 98Right-handed alpha
Helix 25
AC7
B
98 113Right-handed alpha
Helix 26
AC8
B
135 140Right-handed 310
Helix 27
AC9
B
149 159Right-handed alpha
Helix 28
AD1
B
167 169Right-handed 310
Helix 29
AD2
B
170 177Right-handed alpha
Helix 30
AD3
B
187 193Right-handed alpha
Helix 31
AD4
B
218 224Right-handed alpha
Helix 32
AD5
B
225 261Right-handed alpha
Helix 33
AD6
B
270 277Right-handed alpha
Helix 34
AD7
B
277 289Right-handed alpha
Helix 35
AD8
B
291 298Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7A5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
2 7parallel
Strand 3
A
62 65parallel
Strand 4
A
201 217anti-parallel
Strand 5
A
114 129anti-parallel
Strand 6
A
182 186anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
2 7parallel
Strand 3
A
62 65parallel
Strand 4
A
201 217anti-parallel
Strand 5
A
264 266parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
162 165parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
2 7parallel
Strand 3
B
62 65parallel
Strand 4
B
209 217anti-parallel
Strand 5
B
114 129anti-parallel
Strand 6
B
182 186anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
2 7parallel
Strand 3
B
62 65parallel
Strand 4
B
209 217anti-parallel
Strand 5
B
114 129anti-parallel
Strand 6
B
201 203anti-parallel
Strand 7
B
264 266parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
162 165parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il