Analysis of interatomic Contacts of Structural Units in PDB entry:
7A8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7A8R entry

There are 2 chains in PDB entry 7A8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 62LYS 592
B
 SER 63LYS 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7A8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 69Right-handed 310
Helix 2
AA2
A
75 86Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
120 130Right-handed alpha
Helix 5
AA5
A
140 154Right-handed alpha
Helix 6
AA6
A
166 179Right-handed alpha
Helix 7
AA7
A
191 196Right-handed alpha
Helix 8
AA8
A
197 210Right-handed alpha
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
232 238Right-handed 310
Helix 11
AB2
A
239 245Right-handed alpha
Helix 12
AB3
A
258 269Right-handed alpha
Helix 13
AB4
A
296 312Right-handed alpha
Helix 14
AB5
A
323 337Right-handed alpha
Helix 15
AB6
A
349 362Right-handed alpha
Helix 16
AB7
A
394 403Right-handed alpha
Helix 17
AB8
A
419 430Right-handed alpha
Helix 18
AB9
A
435 449Right-handed alpha
Helix 19
AC1
A
453 460Right-handed alpha
Helix 20
AC2
A
461 466Right-handed 310
Helix 21
AC3
A
475 480Right-handed alpha
Helix 22
AC4
A
489 506Right-handed alpha
Helix 23
AC5
A
511 521Right-handed alpha
Helix 24
AC6
A
524 528Right-handed 310
Helix 25
AC7
A
538 552Right-handed alpha
Helix 26
AC8
A
574 581Right-handed 310
Helix 27
AC9
B
64 69Right-handed 310
Helix 28
AD1
B
75 86Right-handed alpha
Helix 29
AD2
B
95 105Right-handed alpha
Helix 30
AD3
B
120 129Right-handed alpha
Helix 31
AD4
B
140 154Right-handed alpha
Helix 32
AD5
B
166 179Right-handed alpha
Helix 33
AD6
B
191 196Right-handed alpha
Helix 34
AD7
B
197 210Right-handed alpha
Helix 35
AD8
B
221 225Right-handed 310
Helix 36
AD9
B
232 237Right-handed 310
Helix 37
AE1
B
238 245Right-handed alpha
Helix 38
AE2
B
258 269Right-handed alpha
Helix 39
AE3
B
296 312Right-handed alpha
Helix 40
AE4
B
323 337Right-handed alpha
Helix 41
AE5
B
349 362Right-handed alpha
Helix 42
AE6
B
394 403Right-handed alpha
Helix 43
AE7
B
419 430Right-handed alpha
Helix 44
AE8
B
435 449Right-handed alpha
Helix 45
AE9
B
453 462Right-handed alpha
Helix 46
AF1
B
467 472Right-handed alpha
Helix 47
AF2
B
475 480Right-handed alpha
Helix 48
AF3
B
489 506Right-handed alpha
Helix 49
AF4
B
514 521Right-handed alpha
Helix 50
AF5
B
524 528Right-handed 310
Helix 51
AF6
B
538 552Right-handed alpha
Helix 52
AF7
B
574 581Right-handed 310
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There are 8 sheets in PDB entry 7A8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
186 189parallel
Strand 3
A
133 137parallel
Strand 4
A
213 219parallel
Strand 5
A
249 254parallel
Strand 6
A
109 112parallel
Strand 7
A
275 278parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 292first strand
Strand 2
A
412 418parallel
Strand 3
A
385 388parallel
Strand 4
A
317 320parallel
Strand 5
A
367 370parallel
Strand 6
A
341 343parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 488first strand
Strand 2
A
587 591anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 561first strand
Strand 2
A
566 572anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
186 189parallel
Strand 3
B
133 137parallel
Strand 4
B
213 219parallel
Strand 5
B
249 254parallel
Strand 6
B
108 112parallel
Strand 7
B
274 278parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 292first strand
Strand 2
B
412 418parallel
Strand 3
B
385 388parallel
Strand 4
B
317 321parallel
Strand 5
B
367 371parallel
Strand 6
B
341 344parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 488first strand
Strand 2
B
587 591anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
555 561first strand
Strand 2
B
566 572anti-parallel
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