Analysis of interatomic Contacts of Structural Units in PDB entry:
7A8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7A8X entry

There are 6 chains in PDB entry 7A8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 188GLN 259
B
 GLY 186LYS 262
C
 ILE 33GLY 112
D
 LEU 187GLN 259
E
 GLY 186LYS 262
F
 ALA 32PHE 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7A8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
201 212Right-handed alpha
Helix 2
AA2
A
237 249Right-handed alpha
Helix 3
AA3
B
202 212Right-handed alpha
Helix 4
AA4
B
237 249Right-handed alpha
Helix 5
AA5
D
203 213Right-handed alpha
Helix 6
AA6
D
237 249Right-handed alpha
Helix 7
AA7
E
202 212Right-handed alpha
Helix 8
AA8
E
237 249Right-handed alpha
Helix 9
AA9
F
34 38Right-handed 310
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There are 4 sheets in PDB entry 7A8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 258first strand
Strand 2
A
189 195anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
216 222anti-parallel
Strand 5
B
216 222anti-parallel
Strand 6
B
228 233anti-parallel
Strand 7
B
189 195anti-parallel
Strand 8
B
252 259anti-parallel
Strand 9
C
74 80anti-parallel
Strand 10
C
83 89anti-parallel
Strand 11
C
95 96anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 70first strand
Strand 2
C
54 60anti-parallel
Strand 3
C
103 109anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 258first strand
Strand 2
D
188 195anti-parallel
Strand 3
D
228 234anti-parallel
Strand 4
D
216 222anti-parallel
Strand 5
E
216 222anti-parallel
Strand 6
E
228 233anti-parallel
Strand 7
E
189 195anti-parallel
Strand 8
E
252 259anti-parallel
Strand 9
F
74 80anti-parallel
Strand 10
F
83 89anti-parallel
Strand 11
F
95 96anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
63 70first strand
Strand 2
F
54 60anti-parallel
Strand 3
F
103 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il