Analysis of interatomic Contacts of Structural Units in PDB entry:
7A8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7A8Z entry

There are 2 chains in PDB entry 7A8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 42ARG 740
B
 ARG 42ARG 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 7A8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 71Right-handed 310
Helix 2
AA2
A
72 85Right-handed alpha
Helix 3
AA3
A
98 111Right-handed alpha
Helix 4
AA4
A
148 156Right-handed alpha
Helix 5
AA5
A
157 159Right-handed 310
Helix 6
AA6
A
160 175Right-handed alpha
Helix 7
AA7
A
240 254Right-handed alpha
Helix 8
AA8
A
259 271Right-handed alpha
Helix 9
AA9
A
332 337Right-handed alpha
Helix 10
AB1
A
378 380Right-handed 310
Helix 11
AB2
A
381 387Right-handed alpha
Helix 12
AB3
A
389 393Right-handed 310
Helix 13
AB4
A
395 399Right-handed 310
Helix 14
AB5
A
400 418Right-handed alpha
Helix 15
AB6
A
436 440Right-handed 310
Helix 16
AB7
A
452 463Right-handed alpha
Helix 17
AB8
A
468 481Right-handed alpha
Helix 18
AB9
A
499 504Right-handed alpha
Helix 19
AC1
A
515 531Right-handed alpha
Helix 20
AC2
A
539 559Right-handed alpha
Helix 21
AC3
A
575 579Right-handed 310
Helix 22
AC4
A
607 617Right-handed alpha
Helix 23
AC5
A
620 635Right-handed alpha
Helix 24
AC6
A
637 641Right-handed 310
Helix 25
AC7
A
655 663Right-handed alpha
Helix 26
AC8
A
692 701Right-handed alpha
Helix 27
AC9
A
702 712Right-handed alpha
Helix 28
AD1
A
716 733Right-handed alpha
Helix 29
AD2
A
733 738Right-handed alpha
Helix 30
AD3
B
44 48Right-handed 310
Helix 31
AD4
B
63 69Right-handed alpha
Helix 32
AD5
B
72 85Right-handed alpha
Helix 33
AD6
B
98 109Right-handed alpha
Helix 34
AD7
B
148 156Right-handed alpha
Helix 35
AD8
B
157 159Right-handed 310
Helix 36
AD9
B
160 175Right-handed alpha
Helix 37
AE1
B
242 254Right-handed alpha
Helix 38
AE2
B
260 272Right-handed alpha
Helix 39
AE3
B
330 335Right-handed alpha
Helix 40
AE4
B
336 338Right-handed 310
Helix 41
AE5
B
381 387Right-handed alpha
Helix 42
AE6
B
387 400Right-handed alpha
Helix 43
AE7
B
400 417Right-handed alpha
Helix 44
AE8
B
422 426Right-handed 310
Helix 45
AE9
B
436 440Right-handed 310
Helix 46
AF1
B
453 464Right-handed alpha
Helix 47
AF2
B
468 481Right-handed alpha
Helix 48
AF3
B
499 504Right-handed alpha
Helix 49
AF4
B
509 514Right-handed alpha
Helix 50
AF5
B
515 531Right-handed alpha
Helix 51
AF6
B
539 560Right-handed alpha
Helix 52
AF7
B
575 579Right-handed 310
Helix 53
AF8
B
580 585Right-handed alpha
Helix 54
AF9
B
605 617Right-handed alpha
Helix 55
AG1
B
620 635Right-handed alpha
Helix 56
AG2
B
637 641Right-handed 310
Helix 57
AG3
B
655 663Right-handed alpha
Helix 58
AG4
B
694 698Right-handed 310
Helix 59
AG5
B
716 733Right-handed alpha
Helix 60
AG6
B
734 736Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7A8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 592first strand
Strand 2
A
597 598anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 668first strand
Strand 2
A
680 682anti-parallel
Strand 3
A
687 689anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
597 598anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 668first strand
Strand 2
B
680 682anti-parallel
Strand 3
B
687 689anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il