Analysis of interatomic Contacts of Structural Units in PDB entry:
7A9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7A9J entry

There is 1 chain in PDB entry 7A9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7A9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
29 46Right-handed alpha
Helix 3
AA3
A
61 75Right-handed alpha
Helix 4
AA4
A
86 97Right-handed alpha
Helix 5
AA5
A
105 112Right-handed alpha
Helix 6
AA6
A
112 118Right-handed alpha
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
142 146Right-handed alpha
Helix 9
AA9
A
182 194Right-handed alpha
Helix 10
AB1
A
218 231Right-handed alpha
Helix 11
AB2
A
239 245Right-handed alpha
Helix 12
AB3
A
245 254Right-handed alpha
Helix 13
AB4
A
261 274Right-handed alpha
Helix 14
AB5
A
294 306Right-handed alpha
Helix 15
AB6
A
316 319Right-handed 310
Helix 16
AB7
A
327 331Right-handed 310
Helix 17
AB8
A
404 406Right-handed 310
Helix 18
AB9
A
415 425Right-handed alpha
Helix 19
AC1
A
459 471Right-handed alpha
Helix 20
AC2
A
472 476Right-handed 310
Helix 21
AC3
A
495 502Right-handed alpha
Helix 22
AC4
A
502 510Right-handed alpha
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There are 5 sheets in PDB entry 7A9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
18 21anti-parallel
Strand 3
A
234 236parallel
Strand 4
A
209 212parallel
Strand 5
A
257 260parallel
Strand 6
A
285 290parallel
Strand 7
A
310 314parallel
Strand 8
A
321 325anti-parallel
Strand 9
A
335 339anti-parallel
Strand 10
A
397 402anti-parallel
Strand 11
A
383 391anti-parallel
Strand 12
A
355 360anti-parallel
Strand 13
A
344 347anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
53 57parallel
Strand 3
A
101 104parallel
Strand 4
A
124 127parallel
Strand 5
A
139 141parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 167first strand
Strand 2
A
177 181anti-parallel
Strand 3
A
367 369anti-parallel
Strand 4
A
374 376anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
412 414anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 439first strand
Strand 2
A
443 452anti-parallel
Strand 3
A
479 482parallel
Strand 4
A
512 515anti-parallel
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