Analysis of interatomic Contacts of Structural Units in PDB entry:
7AAB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AAB entry

There are 2 chains in PDB entry 7AAB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 662THR 1011
B
 LYS 662THR 1011
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7AAB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
666 677Right-handed alpha
Helix 2
AA2
A
678 689Right-handed alpha
Helix 3
AA3
A
702 722Right-handed alpha
Helix 4
AA4
A
725 740Right-handed alpha
Helix 5
AA5
A
754 780Right-handed alpha
Helix 6
AA6
A
788 797Right-handed alpha
Helix 7
AA7
A
808 821Right-handed alpha
Helix 8
AA8
A
843 849Right-handed alpha
Helix 9
AA9
A
850 852Right-handed 310
Helix 10
AB1
A
865 867Right-handed 310
Helix 11
AB2
A
868 876Right-handed alpha
Helix 12
AB3
A
885 889Right-handed 310
Helix 13
AB4
A
900 906Right-handed alpha
Helix 14
AB5
A
907 909Right-handed 310
Helix 15
AB6
A
958 961Right-handed 310
Helix 16
AB7
A
993 995Right-handed 310
Helix 17
AB8
B
666 677Right-handed alpha
Helix 18
AB9
B
678 689Right-handed alpha
Helix 19
AC1
B
702 722Right-handed alpha
Helix 20
AC2
B
725 740Right-handed alpha
Helix 21
AC3
B
754 780Right-handed alpha
Helix 22
AC4
B
788 797Right-handed alpha
Helix 23
AC5
B
808 821Right-handed alpha
Helix 24
AC6
B
843 849Right-handed alpha
Helix 25
AC7
B
850 852Right-handed 310
Helix 26
AC8
B
865 867Right-handed 310
Helix 27
AC9
B
868 876Right-handed alpha
Helix 28
AD1
B
885 889Right-handed 310
Helix 29
AD2
B
900 906Right-handed alpha
Helix 30
AD3
B
907 909Right-handed 310
Helix 31
AD4
B
958 961Right-handed 310
Helix 32
AD5
B
993 995Right-handed 310
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There are 8 sheets in PDB entry 7AAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 803first strand
Strand 2
A
831 841anti-parallel
Strand 3
A
997 1007anti-parallel
Strand 4
A
916 925anti-parallel
Strand 5
A
857 863anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
988 991anti-parallel
Strand 3
A
947 950anti-parallel
Strand 4
A
929 932parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 956first strand
Strand 2
A
974 976anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 964first strand
Strand 2
A
967 969anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 803first strand
Strand 2
B
831 841anti-parallel
Strand 3
B
997 1007anti-parallel
Strand 4
B
916 925anti-parallel
Strand 5
B
857 863anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
895 898first strand
Strand 2
B
988 991anti-parallel
Strand 3
B
947 950anti-parallel
Strand 4
B
929 932parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
954 956first strand
Strand 2
B
974 976anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
962 964first strand
Strand 2
B
967 969anti-parallel
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